ENSGALG00000035951


Gallus gallus

Features
Gene ID: ENSGALG00000035951
  
Biological name :SOX12
  
Synonyms : SOX12 / SRY-box 12
  
Possible biological names infered from orthology : O15370 / Q04890 / Transcription factor SOX-12
  
Species: Gallus gallus
  
Chr. number: 20
Strand: -1
Band:
Gene start: 10174797
Gene end: 10175639
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000047214
NCBI entrez gene - 777179     See in Manteia.
RefSeq - XM_015296469
swissprot - A0A1D5P3F9
Ensembl - ENSGALG00000035951
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sox12ENSDARG00000025847Danio rerio
 SOX12ENSG00000177732Homo sapiens
 Sox12ENSMUSG00000051817Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SOX4 / transcription factor SOX-4 / Q06831* / Q06945* / SRY-box 4*ENSGALG0000003649749
SOX10 / Q9W757 / Transcription factor SOX-10 / Q04888* / P56693* / SRY-box 10*ENSGALG0000001229026
SOX9 / P48434 / Transcription factor SOX-9 / Q04887* / P48436* / SRY-box 9*ENSGALG0000000438625
SOX8 / transcription factor SOX-8 / Q04886* / P57073* / SRY-box 8* / SRY (sex determining region Y)-box 8*ENSGALG0000000526324
SOX2 / P48430 / Transcription factor SOX-2 / P48431* / SRY-box 2*ENSGALG0000004346023
SOX18 / transcription factor SOX-18 / P35713* / P43680* / SRY-box 18*ENSGALG0000003411823
SOX17 / transcription factor SOX-17 / Q61473* / Q9H6I2* / SRY-box 17*ENSGALG0000003285121
SOX21 / Q9W7R5 / Transcription factor SOX-21 / Q9Y651* / Q811W0* / SRY-box 21*ENSGALG0000003515721
SOX7* / Q9BT81* / P40646* / SRY-box 7* / AC105001.2* / SRY (sex determining region Y)-box 7*ENSGALG0000004129621
SOX17* / Q61473* / Q9H6I2* / SRY-box 17* / Transcription factor SOX-17 *ENSGALG0000003299421
SOX14 / Q9W7R6 / Transcription factor SOX-14 / Q04892* / O95416* / SRY-box 14*ENSGALG0000003735220
SOX1 / transcription factor SOX-1 / O00570* / P53783* / SRY-box 1*ENSGALG0000003035320


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0021510 spinal cord development IEA
 biological_processGO:0045165 cell fate commitment IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0065004 protein-DNA complex assembly IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0032993 protein-DNA complex IEA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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