ENSMUSG00000020642


Mus musculus

Features
Gene ID: ENSMUSG00000020642
  
Biological name :Rnf144a
  
Synonyms : E3 ubiquitin-protein ligase RNF144A / Q925F3 / Rnf144a
  
Possible biological names infered from orthology : P50876 / ring finger protein 144A
  
Species: Mus musculus
  
Chr. number: 12
Strand: -1
Band: A2
Gene start: 26300964
Gene end: 26415254
  
Corresponding Affymetrix probe sets: 10399696 (MoGene1.0st)   1421242_at (Mouse Genome 430 2.0 Array)   1421243_at (Mouse Genome 430 2.0 Array)   1438404_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000020971
Ensembl peptide - ENSMUSP00000056073
Ensembl peptide - ENSMUSP00000152807
NCBI entrez gene - 108089     See in Manteia.
MGI - MGI:1344401
RefSeq - XM_017314933
RefSeq - NM_001081977
RefSeq - NM_080563
RefSeq - XM_006514948
RefSeq - XM_006514949
RefSeq - XM_011243807
RefSeq - XM_017314932
RefSeq - XM_006514944
RefSeq Peptide - NP_001075446
RefSeq Peptide - NP_542130
swissprot - Q925F3
swissprot - A0A1Y7VMM6
Ensembl - ENSMUSG00000020642
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q5RFV4ENSDARG00000020600Danio rerio
 rnf144abENSDARG00000042557Danio rerio
 RNF144AENSGALG00000028709Gallus gallus
 P50876ENSG00000151692Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8BKD6 / Rnf144b / E3 ubiquitin-protein ligase RNF144B / Q7Z419* / ring finger protein 144B*ENSMUSG0000003806855
A2A7Q9 / Rnf19b / E3 ubiquitin-protein ligase RNF19B / Q6ZMZ0* / ring finger protein 19B*ENSMUSG0000002879329
P50636 / Rnf19a / E3 ubiquitin-protein ligase RNF19A / Q9NV58* / ring finger protein 19A, RBR E3 ubiquitin protein ligase*ENSMUSG0000002228028
Rnf14 / Q9JI90 / ring finger protein 14 / Q9UBS8*ENSMUSG0000006045022


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR002867  IBR domain
 IPR017907  Zinc finger, RING-type, conserved site
 IPR031127  E3 ubiquitin ligase RBR family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0000151 ubiquitin ligase complex IBA
 cellular_componentGO:0005794 Golgi apparatus IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle ISO
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0031624 ubiquitin conjugating enzyme binding IBA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000022672 Prkdc / P97313 / DNA-dependent protein kinase catalytic subunit / P78527* / protein kinase, DNA-activated, catalytic polypeptide*  / complex






 

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