ENSMUSG00000034681


Mus musculus

Features
Gene ID: ENSMUSG00000034681
  
Biological name :Rnps1
  
Synonyms : Q99M28 / RNA-binding protein with serine-rich domain 1 / Rnps1
  
Possible biological names infered from orthology : Q15287
  
Species: Mus musculus
  
Chr. number: 17
Strand: 1
Band: A3.3
Gene start: 24414675
Gene end: 24425895
  
Corresponding Affymetrix probe sets: 10442435 (MoGene1.0st)   10543080 (MoGene1.0st)   1437027_x_at (Mouse Genome 430 2.0 Array)   1437359_at (Mouse Genome 430 2.0 Array)   1437851_x_at (Mouse Genome 430 2.0 Array)   1438267_x_at (Mouse Genome 430 2.0 Array)   1448324_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000085867
Ensembl peptide - ENSMUSP00000111028
Ensembl peptide - ENSMUSP00000126345
NCBI entrez gene - 19826     See in Manteia.
MGI - MGI:97960
RefSeq - XM_017317362
RefSeq - NM_001080127
RefSeq - NM_001080128
RefSeq - NM_009070
RefSeq Peptide - NP_001073597
RefSeq Peptide - NP_001344555
RefSeq Peptide - NP_033096
RefSeq Peptide - NP_001073596
swissprot - Q99M28
Ensembl - ENSMUSG00000034681
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FO904885.3ENSDARG00000116743Danio rerio
 RNPS1ENSGALG00000009288Gallus gallus
 RNPS1ENSG00000205937Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034201  RNPS1, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0061574 ASAP complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000078676 Casc3 / Q8K3W3 / Protein CASC3 / O15234* / cancer susceptibility 3*  / complex
 ENSMUSG00000025580 Eif4a3 / Q91VC3 / Eukaryotic initiation factor 4A-III Eukaryotic initiation factor 4A-III, N-terminally processed / P38919* / eukaryotic translation initiation factor 4A3*  / complex
 ENSMUSG00000028609 Magoh / P61327 / Protein mago nashi homolog / P61326* / mago homolog, exon junction complex core component*  / complex
 ENSMUSG00000038398 Upf3a / UPF3 regulator of nonsense transcripts homolog A (yeast) / Q9H1J1* / UPF3A, regulator of nonsense mediated mRNA decay*  / complex
 ENSMUSG00000043241 Upf2 / UPF2 regulator of nonsense transcripts homolog (yeast) / Q9HAU5* / UPF2, regulator of nonsense mediated mRNA decay*  / complex
 ENSMUSG00000038374 Rbm8a / Q9CWZ3 / RNA-binding protein 8A / Q9Y5S9* / RNA binding motif protein 8A*  / complex
 ENSMUSG00000094973 Gm8994 / EIF4A3* / P38919* / eukaryotic translation initiation factor 4A3*  / complex
 ENSMUSG00000036572 Upf3b / UPF3 regulator of nonsense transcripts homolog B (yeast) / Q9BZI7* / UPF3B, regulator of nonsense mediated mRNA decay*  / complex






 

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