ENSDARG00000079045


Danio rerio

Features
Gene ID: ENSDARG00000079045
  
Biological name :opn8b
  
Synonyms : opn8b / opsin 8, group member b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 44311448
Gene end: 44347622
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000098720
NCBI entrez gene - 569628     See in Manteia.
swissprot - F1QCL1
ZFIN ID - ZDB-GENE-070705-120
Ensembl - ENSDARG00000079045
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OPN5L2ENSGALG00000016699Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
opn8a / opsin 8, group member aENSDARG0000008618643
opn8c / opsin 8, group member cENSDARG0000004347933
opn5 / opsin 5 / Q6U736* / Q6VZZ7*ENSDARG0000007011031
opn7a / opsin 7, group member aENSDARG0000002420830
opn7d / opsin 7, group member dENSDARG0000006812429
opn7c / opsin 7, group member cENSDARG0000003086727
opn9 / opsin 9ENSDARG0000010423127
opn7b / opsin 7, group member bENSDARG0000011658427
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646025
rrh / retinal pigment epithelium-derived rhodopsin homolog / O14718* / O35214*ENSDARG0000003953424
parietopsinENSDARG0000005205624
opn4xa / opsin 4xaENSDARG0000007912924
opn4xb / opsin 4xbENSDARG0000010325924
opn4.1 / Q1JPS6 / opsin 4.1 / OPN4* / Q9UHM6* / Q9QXZ9* / opsin 4* / Melanopsin *ENSDARG0000000755323
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782223
tmtopsb / teleost multiple tissue opsin bENSDARG0000003224623
parapinopsinb / parapinopsin bENSDARG0000004467223
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSDARG0000005277523
opn4b / opsin 4b / OPN4* / Q9UHM6* / opsin 4*ENSDARG0000005392923
tmtops2a / teleost multiple tissue opsin 2aENSDARG0000006151523


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR017452  GPCR, rhodopsin-like, 7TM
 IPR027430  Visual pigments (opsins) retinal binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0009584 detection of visible light IEA
 biological_processGO:0018298 protein-chromophore linkage IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004871 obsolete signal transducer activity IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA
 molecular_functionGO:0009881 photoreceptor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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