ENSDARG00000043479


Danio rerio

Features
Gene ID: ENSDARG00000043479
  
Biological name :opn8c
  
Synonyms : opn8c / opsin 8, group member c
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 13750537
Gene end: 13774826
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000063830
Ensembl peptide - ENSDARP00000122580
NCBI entrez gene - 103909302     See in Manteia.
swissprot - F1R302
swissprot - Q5TZG0
ZFIN ID - ZDB-GENE-040724-51
Ensembl - ENSDARG00000043479
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
opn8b / opsin 8, group member bENSDARG0000007904530
opn8a / opsin 8, group member aENSDARG0000008618627
opn9 / opsin 9ENSDARG0000010423127
opn7d / opsin 7, group member dENSDARG0000006812426
opn5 / opsin 5 / Q6U736* / Q6VZZ7*ENSDARG0000007011026
opn7b / opsin 7, group member bENSDARG0000011658425
opn7a / opsin 7, group member aENSDARG0000002420824
opn7c / opsin 7, group member cENSDARG0000003086724
opn6b / opsin 6, group member bENSDARG0000009805123
tmtops3a / teleost multiple tissue opsin 3aENSDARG0000003646022
opn6a / opsin 6, group member aENSDARG0000010243022
tmtops3b / teleost multiple tissue opsin 3bENSDARG0000009062921
valopa / vertebrate ancient long opsin aENSDARG0000002115020
tmtops2b / teleost multiple tissue opsin 2bENSDARG0000002782220
tmtopsb / teleost multiple tissue opsin bENSDARG0000003224620
parapinopsinb / parapinopsin bENSDARG0000004467220
opn3 / opsin 3 / Q9H1Y3* / Q9WUK7*ENSDARG0000005277520
valopb / vertebrate ancient long opsin bENSDARG0000005418120
tmtops2a / teleost multiple tissue opsin 2aENSDARG0000006151520
opn4xa / opsin 4xaENSDARG0000007912920


Protein motifs (from Interpro)
Interpro ID Name
 IPR000276  G protein-coupled receptor, rhodopsin-like
 IPR017452  GPCR, rhodopsin-like, 7TM


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IEA
 biological_processGO:0007602 phototransduction IDA
 biological_processGO:0009584 detection of visible light IEA
 cellular_componentGO:0001750 photoreceptor outer segment IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004930 G-protein coupled receptor activity IEA
 molecular_functionGO:0008020 G-protein coupled photoreceptor activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr