ENSDARG00000003469


Danio rerio

Features
Gene ID: ENSDARG00000003469
  
Biological name :neurod4
  
Synonyms : neurod4 / neuronal differentiation 4
  
Possible biological names infered from orthology : neurogenic differentiation 4 / O09105 / Q9HD90
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 28343988
Gene end: 28347039
  
Corresponding Affymetrix probe sets: Dr.10718.1.S1_at (Zebrafish Array)   NM_170762_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000122926
NCBI entrez gene - 266958     See in Manteia.
RefSeq - NM_170762
RefSeq Peptide - NP_739568
swissprot - F1QWM8
ZFIN ID - ZDB-GENE-030730-1
Ensembl - ENSDARG00000003469
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NEUROD4ENSGALG00000034306Gallus gallus
 Q9HD90ENSG00000123307Homo sapiens
 O09105ENSMUSG00000048015Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O42202 / neurod1 / neuronal differentiation 1 / Q13562* / Q60867* / Neurogenic differentiation factor 1 *ENSDARG0000001956647
neurod2 / neurogenic differentiation 2 / Q15784* / Q62414* / neuronal differentiation 2*ENSDARG0000001685438
Q6NYU3 / neurod6a / neuronal differentiation 6a / Q96NK8* / P48986* / NEUROD6* / neuronal differentiation 6* / neurogenic differentiation 6*ENSDARG0000004000836
Q9W6C7 / neurod6b / neuronal differentiation 6b / Q96NK8* / NEUROD6* / neuronal differentiation 6*ENSDARG0000002079435
O42606 / neurog1 / neurogenin 1 / Q9H2A3* / NEUROG2* / neurogenin 2*ENSDARG0000005613016
neurog3 / neurogenin 3 / P70661* / Q9Y4Z2*ENSDARG0000001695114
bhlha15 / basic helix-loop-helix family, member a15 / Q7RTS1* / Q9QYC3* / Class A basic helix-loop-helix protein 15 *ENSDARG0000004516614
atoh1a / atonal bHLH transcription factor 1a / 1 * / ATOH1* / P48985* / Q92858* / atonal bHLH transcription factor 1*ENSDARG0000005529414
atoh1c / atonal bHLH transcription factor 1cENSDARG0000003960213
atoh8 / D2CLZ9 / atonal bHLH transcription factor 8 / 8 * / Q96SQ7* / Q99NA2*ENSDARG0000003755512
atoh7 / Q8AW52 / atonal bHLH transcription factor 7 / 7 * / Q8N100* / Q9Z2E5*ENSDARG0000006955212
BX957231.1ENSDARG000001147484


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR016637  Neurogenic differentiation factor NeuroD
 IPR022575  Neurogenic differentiation factor, domain of unknown function
 IPR032651  Neurogenic differentiation factor 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001839 neural plate morphogenesis IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IGI
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0048666 neuron development IEA
 biological_processGO:0050769 positive regulation of neurogenesis IMP
 biological_processGO:0071698 olfactory placode development IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000048 olfactory placode olfactory placode pioneer neuron decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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