ENSDARG00000037555


Danio rerio

Features
Gene ID: ENSDARG00000037555
  
Biological name :atoh8
  
Synonyms : atoh8 / atonal bHLH transcription factor 8 / D2CLZ9
  
Possible biological names infered from orthology : 8 / Q96SQ7 / Q99NA2
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 9507291
Gene end: 9522364
  
Corresponding Affymetrix probe sets: Dr.22150.1.S1_at (Zebrafish Array)   Dr.22150.2.A1_at (Zebrafish Array)   NM_001079991_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000054688
NCBI entrez gene - 561606     See in Manteia.
RefSeq - NM_001079991
RefSeq Peptide - NP_001073460
swissprot - D2CLZ9
ZFIN ID - ZDB-GENE-061215-7
Ensembl - ENSDARG00000037555
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ATOH8ENSGALG00000033083Gallus gallus
 ATOH8ENSG00000168874Homo sapiens
 8 ENSMUSG00000037621Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6NYU3 / neurod6a / neuronal differentiation 6a / Q96NK8* / P48986* / NEUROD6* / neuronal differentiation 6* / neurogenic differentiation 6*ENSDARG0000004000818
O42202 / neurod1 / neuronal differentiation 1 / Q13562* / Q60867* / Neurogenic differentiation factor 1 *ENSDARG0000001956617
neurod2 / neurogenic differentiation 2 / Q15784* / Q62414* / neuronal differentiation 2*ENSDARG0000001685417
Q9W6C7 / neurod6b / neuronal differentiation 6b / Q96NK8* / NEUROD6* / neuronal differentiation 6*ENSDARG0000002079416
neurod4 / neuronal differentiation 4 / O09105* / Q9HD90* / neurogenic differentiation 4*ENSDARG0000000346915
atoh1a / atonal bHLH transcription factor 1a / 1 * / ATOH1* / P48985* / Q92858* / atonal bHLH transcription factor 1*ENSDARG0000005529413
O42606 / neurog1 / neurogenin 1 / Q9H2A3* / NEUROG2* / neurogenin 2*ENSDARG0000005613012
bhlha15 / basic helix-loop-helix family, member a15 / Q7RTS1* / Q9QYC3* / Class A basic helix-loop-helix protein 15 *ENSDARG0000004516612
atoh1c / atonal bHLH transcription factor 1cENSDARG0000003960212
atoh7 / Q8AW52 / atonal bHLH transcription factor 7 / 7 * / Q8N100* / Q9Z2E5*ENSDARG0000006955211
neurog3 / neurogenin 3 / P70661* / Q9Y4Z2*ENSDARG0000001695111
BX957231.1ENSDARG0000011474810


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR032660  Protein atonal homologue 8


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007507 heart development IGI
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0048797 swim bladder formation IMP
 biological_processGO:0061074 regulation of neural retina development IMP
 biological_processGO:2001014 regulation of skeletal muscle cell differentiation IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000076 swim bladder swim bladder uninflated , abnormal
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 ZFA:0000360 heart tube heart tube shape , abnormal
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 ZFA:0001094 whole organism whole organism decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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