ENSDARG00000040008


Danio rerio

Features
Gene ID: ENSDARG00000040008
  
Biological name :neurod6a
  
Synonyms : neurod6a / neuronal differentiation 6a / Q6NYU3
  
Possible biological names infered from orthology : NEUROD6 / neurogenic differentiation 6 / neuronal differentiation 6 / P48986 / Q96NK8
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 32411753
Gene end: 32474949
  
Corresponding Affymetrix probe sets: Dr.8196.1.S1_at (Zebrafish Array)   NM_131816_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000089629
Ensembl peptide - ENSDARP00000096474
NCBI entrez gene - 114414     See in Manteia.
RefSeq - NM_131816
RefSeq Peptide - NP_571891
swissprot - F1QES9
swissprot - Q6NYU3
ZFIN ID - ZDB-GENE-010608-1
Ensembl - ENSDARG00000040008
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q96NK8ENSG00000164600Homo sapiens
 P48986ENSMUSG00000037984Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9W6C7 / neurod6b / neuronal differentiation 6b / Q96NK8* / NEUROD6* / neuronal differentiation 6*ENSDARG0000002079462
O42202 / neurod1 / neuronal differentiation 1 / Q13562* / Q60867* / Neurogenic differentiation factor 1 *ENSDARG0000001956648
neurod2 / neurogenic differentiation 2 / Q15784* / Q62414* / neuronal differentiation 2*ENSDARG0000001685445
neurod4 / neuronal differentiation 4 / O09105* / Q9HD90* / neurogenic differentiation 4*ENSDARG0000000346938
O42606 / neurog1 / neurogenin 1 / Q9H2A3* / NEUROG2* / neurogenin 2*ENSDARG0000005613018
neurog3 / neurogenin 3 / P70661* / Q9Y4Z2*ENSDARG0000001695116
atoh8 / D2CLZ9 / atonal bHLH transcription factor 8 / 8 * / Q96SQ7* / Q99NA2*ENSDARG0000003755514
atoh1a / atonal bHLH transcription factor 1a / 1 * / ATOH1* / P48985* / Q92858* / atonal bHLH transcription factor 1*ENSDARG0000005529413
bhlha15 / basic helix-loop-helix family, member a15 / Q7RTS1* / Q9QYC3* / Class A basic helix-loop-helix protein 15 *ENSDARG0000004516613
atoh7 / Q8AW52 / atonal bHLH transcription factor 7 / 7 * / Q8N100* / Q9Z2E5*ENSDARG0000006955213
atoh1c / atonal bHLH transcription factor 1cENSDARG0000003960212
BX957231.1ENSDARG000001147485


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR016637  Neurogenic differentiation factor NeuroD
 IPR022575  Neurogenic differentiation factor, domain of unknown function
 IPR032650  Neurogenic differentiation factor 6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0050769 positive regulation of neurogenesis IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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