ENSDARG00000009607


Danio rerio

Features
Gene ID: ENSDARG00000009607
  
Biological name :ccnc
  
Synonyms : ccnc / cyclin C
  
Possible biological names infered from orthology : P24863 / Q62447
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 5764486
Gene end: 5775507
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000017380
NCBI entrez gene - 335429     See in Manteia.
RefSeq - NM_199951
RefSeq Peptide - NP_956245
swissprot - F1RBC9
ZFIN ID - ZDB-GENE-030131-7369
Ensembl - ENSDARG00000009607
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CCNCENSGALG00000015471Gallus gallus
 CCNCENSG00000112237Homo sapiens
 CcncENSMUSG00000028252Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ccnk / cyclin K / O75909*ENSDARG0000003414628
ccnl1a / cyclin L1a / CCNL1* / Q52KE7* / Q9UK58* / cyclin L1* / Mus musculus cyclin L1 (Ccnl1), transcript variant 2, mRNA.*ENSDARG0000005512425
ccnt2a / cyclin T2a / CCNT2* / O60583* / Q7TQK0* / cyclin T2*ENSDARG0000003668525
ccnl1b / cyclin L1b / CCNL1* / Q52KE7* / Q9UK58* / cyclin L1* / Mus musculus cyclin L1 (Ccnl1), transcript variant 2, mRNA.*ENSDARG0000001214024
ccnt1 / cyclin T1 / O60563* / Q9QWV9*ENSDARG0000001752524
ccnt2b / cyclin T2bENSDARG0000003651023
ccnq / cyclin Q / Fam58b* / Q8QZR8* / Q8N1B3* / family with sequence similarity 58, member B*ENSDARG0000003753718


Protein motifs (from Interpro)
Interpro ID Name
 IPR006671  Cyclin, N-terminal
 IPR013763  Cyclin-like
 IPR031658  Cyclin, C-terminal domain 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0072015 glomerular visceral epithelial cell development IMP
 biological_processGO:1901409 positive regulation of phosphorylation of RNA polymerase II C-terminal domain IBA
 cellular_componentGO:0000307 cyclin-dependent protein kinase holoenzyme complex IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0016592 mediator complex IEA
 molecular_functionGO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IBA


Pathways (from Reactome)
Pathway description
Generic Transcription Pathway
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0001557 pronephric glomerulus pronephric glomerulus physical object quality , abnormal
pronephric glomerulus lacks all parts of type pronephric podocyte slit diaphragm, abnormal
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 ZFA:0001673 pronephric podocyte pronephric podocyte cell projection malformed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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