ENSDARG00000014420


Danio rerio

Features
Gene ID: ENSDARG00000014420
  
Biological name :elavl3
  
Synonyms : elavl3 / ELAV like neuron-specific RNA binding protein 3
  
Possible biological names infered from orthology : ELAV-like protein 3 / ELAV like RNA binding protein 3 / Q14576 / Q60900
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 46800190
Gene end: 46818001
  
Corresponding Affymetrix probe sets: Dr.1691.14.S1_at (Zebrafish Array)   Dr.20167.3.S1_at (Zebrafish Array)   Dr.20167.8.A1_at (Zebrafish Array)   Dr.25167.1.S1_at (Zebrafish Array)   Dr.25167.1.S2_at (Zebrafish Array)   NM_131449_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000030680
Ensembl peptide - ENSDARP00000012109
Ensembl peptide - ENSDARP00000116731
Ensembl peptide - ENSDARP00000130425
NCBI entrez gene - 30732     See in Manteia.
RefSeq - NM_131449
RefSeq Peptide - NP_571524
swissprot - F1QGN3
swissprot - A0A0R4IC33
swissprot - F1R0S9
swissprot - Q6P105
ZFIN ID - ZDB-GENE-980526-76
Ensembl - ENSDARG00000014420
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ELAVL3ENSG00000196361Homo sapiens
 Elavl3ENSMUSG00000003410Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
elavl4 / ELAV like neuron-specific RNA binding protein 4 / P26378* / Q61701* / ELAV like RNA binding protein 4* / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA.*ENSDARG0000004563985
elavl2 / ELAV like neuron-specific RNA binding protein 2 / Q12926* / Q60899* / ELAV like RNA binding protein 2* / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA.*ENSDARG0000004073282
elavl1b / ELAV like RNA binding protein 1b / Q15717* / P70372* / ELAVL1* / ELAV-like protein 1 * / ELAV like RNA binding protein 1*ENSDARG0000010174464
elavl1a / ELAV like RNA binding protein 1a / Q15717* / P70372* / ELAVL1* / ELAV-like protein 1 * / ELAV like RNA binding protein 1*ENSDARG0000003869563
rbms3 / RNA binding motif, single stranded interacting protein / Q6XE24* / Q8BWL5* / RNA binding motif single stranded interacting protein 3*ENSDARG0000004457426
rbms2a / RNA binding motif, single stranded interacting protein 2a / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2*ENSDARG0000004417926
rbms2b / RNA binding motif, single stranded interacting protein 2b / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2*ENSDARG0000005615025
puf60a / poly-U binding splicing factor a / PUF60* / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60* / Poly(U)-binding-splicing factor PUF60 *ENSDARG0000003217524
rbms1a / RNA binding motif, single stranded interacting protein 1a / RBMS1* / Q91W59* / P29558* / RNA binding motif single stranded interacting protein 1*ENSDARG0000007402324
pabpc1a / poly(A) binding protein, cytoplasmic 1a / PABPC1* / Pabpc2* / PABPC3* / Pabpc6* / Q9H361* / P11940* / P29341* / Polyadenylate-binding protein 1 * / poly(A) binding protein cytopla...ENSDARG0000001721920
pabpc4 / poly(A) binding protein, cytoplasmic 4 (inducible form) / Q13310* / P0CB38* / PABPC4L* / poly(A) binding protein cytoplasmic 4* / poly(A) binding protein cytoplasmic 4 like*ENSDARG0000005925920
pabpc1l / poly(A) binding protein, cytoplasmic 1-like / Q4VXU2*ENSDARG0000000259720
Q6IQE0 / puf60b / poly-U binding splicing factor b / PUF60* / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60* / Poly(U)-binding-splicing factor PUF60 *ENSDARG0000000124120
pabpc1b / poly A binding protein, cytoplasmic 1 b / PABPC1* / Pabpc2* / PABPC3* / Pabpc6* / Q9H361* / P11940* / P29341* / Polyadenylate-binding protein 1 * / poly(A) binding protein cytopla...ENSDARG0000002114020
RBMS1 (1 of many) / RNA binding motif single stranded interacting protein 1 / RBMS1* / P29558*ENSDARG0000010382316


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002343  Paraneoplastic encephalomyelitis antigen
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006548  Splicing factor ELAV/Hu
 IPR034775  Splicing factor ELAV/Hu, RNA recognition motif 1
 IPR034915  HuC, RNA recognition motif 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0050767 regulation of neurogenesis IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000029 hindbrain hindbrain cell proliferation in hindbrain ventricular zone decreased occurrence , abnormal
hindbrain neurogenesis premature , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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