ENSDARG00000074023


Danio rerio

Features
Gene ID: ENSDARG00000074023
  
Biological name :rbms1a
  
Synonyms : rbms1a / RNA binding motif, single stranded interacting protein 1a
  
Possible biological names infered from orthology : P29558 / Q91W59 / RBMS1 / RNA binding motif single stranded interacting protein 1
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 10909183
Gene end: 10960394
  
Corresponding Affymetrix probe sets: Dr.8859.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000064859
NCBI entrez gene - 564994     See in Manteia.
RefSeq - XM_005155722
RefSeq - XM_005155723
RefSeq - XM_688303
swissprot - E7FAG7
ZFIN ID - ZDB-GENE-030131-4967
Ensembl - ENSDARG00000074023
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBMS1ENSGALG00000011132Gallus gallus
 RBMS1ENSG00000153250Homo sapiens
 Rbms1ENSMUSG00000026970Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbms3 / RNA binding motif, single stranded interacting protein / Q6XE24* / Q8BWL5* / RNA binding motif single stranded interacting protein 3*ENSDARG0000004457464
rbms2b / RNA binding motif, single stranded interacting protein 2b / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2*ENSDARG0000005615063
rbms2a / RNA binding motif, single stranded interacting protein 2a / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2*ENSDARG0000004417961
RBMS1 (1 of many) / RNA binding motif single stranded interacting protein 1 / RBMS1* / P29558*ENSDARG0000010382344
pabpc1a / poly(A) binding protein, cytoplasmic 1a / PABPC1* / Pabpc2* / PABPC3* / Pabpc6* / Q9H361* / P11940* / P29341* / Polyadenylate-binding protein 1 * / poly(A) binding protein cytopla...ENSDARG0000001721926
pabpc4 / poly(A) binding protein, cytoplasmic 4 (inducible form) / Q13310* / P0CB38* / PABPC4L* / poly(A) binding protein cytoplasmic 4* / poly(A) binding protein cytoplasmic 4 like*ENSDARG0000005925925
pabpc1b / poly A binding protein, cytoplasmic 1 b / PABPC1* / Pabpc2* / PABPC3* / Pabpc6* / Q9H361* / P11940* / P29341* / Polyadenylate-binding protein 1 * / poly(A) binding protein cytopla...ENSDARG0000002114025
elavl2 / ELAV like neuron-specific RNA binding protein 2 / Q12926* / Q60899* / ELAV like RNA binding protein 2* / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA.*ENSDARG0000004073223
elavl4 / ELAV like neuron-specific RNA binding protein 4 / P26378* / Q61701* / ELAV like RNA binding protein 4* / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA.*ENSDARG0000004563923
elavl3 / ELAV like neuron-specific RNA binding protein 3 / Q60900* / Q14576* / ELAV-like protein 3 * / ELAV like RNA binding protein 3*ENSDARG0000001442022
pabpc1l / poly(A) binding protein, cytoplasmic 1-like / Q4VXU2*ENSDARG0000000259721
elavl1b / ELAV like RNA binding protein 1b / Q15717* / P70372* / ELAVL1* / ELAV-like protein 1 * / ELAV like RNA binding protein 1*ENSDARG0000010174420
elavl1a / ELAV like RNA binding protein 1a / Q15717* / P70372* / ELAVL1* / ELAV-like protein 1 * / ELAV like RNA binding protein 1*ENSDARG0000003869519
puf60a / poly-U binding splicing factor a / PUF60* / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60* / Poly(U)-binding-splicing factor PUF60 *ENSDARG0000003217517
Q6IQE0 / puf60b / poly-U binding splicing factor b / PUF60* / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60* / Poly(U)-binding-splicing factor PUF60 *ENSDARG0000000124117


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002343  Paraneoplastic encephalomyelitis antigen


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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