ENSDARG00000001241


Danio rerio

Features
Gene ID: ENSDARG00000001241
  
Biological name :puf60b
  
Synonyms : poly-U binding splicing factor b / puf60b / Q6IQE0
  
Possible biological names infered from orthology : poly(U) binding splicing factor 60 / Poly(U)-binding-splicing factor PUF60 / PUF60 / Q3UEB3 / Q9UHX1
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 41146560
Gene end: 41158143
  
Corresponding Affymetrix probe sets: Dr.2898.1.A1_at (Zebrafish Array)   NM_001002121_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000052273
Ensembl peptide - ENSDARP00000153956
Ensembl peptide - ENSDARP00000142930
Ensembl peptide - ENSDARP00000142725
Ensembl peptide - ENSDARP00000142653
Ensembl peptide - ENSDARP00000141568
Ensembl peptide - ENSDARP00000123644
Ensembl peptide - ENSDARP00000034301
NCBI entrez gene - 415211     See in Manteia.
RefSeq - NM_001002121
RefSeq - XM_009303395
RefSeq Peptide - NP_001002121
swissprot - A0A1D5NSB3
swissprot - A0A1D5NS44
swissprot - A0A0R4IZB1
swissprot - Q6IQE0
swissprot - A0A1N8RFI4
swissprot - A0A1N8PL29
swissprot - A0A1D5NSV9
ZFIN ID - ZDB-GENE-040625-116
Ensembl - ENSDARG00000001241
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PUF60ENSGALG00000039901Gallus gallus
 PUF60ENSG00000179950Homo sapiens
 Puf60ENSMUSG00000002524Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
puf60a / poly-U binding splicing factor a / PUF60* / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60* / Poly(U)-binding-splicing factor PUF60 *ENSDARG0000003217580
pabpc1a / poly(A) binding protein, cytoplasmic 1a / PABPC1* / Pabpc2* / PABPC3* / Pabpc6* / Q9H361* / P11940* / P29341* / Polyadenylate-binding protein 1 * / poly(A) binding protein cytopla...ENSDARG0000001721916
pabpc1b / poly A binding protein, cytoplasmic 1 b / PABPC1* / Pabpc2* / PABPC3* / Pabpc6* / Q9H361* / P11940* / P29341* / Polyadenylate-binding protein 1 * / poly(A) binding protein cytopla...ENSDARG0000002114015
pabpc4 / poly(A) binding protein, cytoplasmic 4 (inducible form) / Q13310* / P0CB38* / PABPC4L* / poly(A) binding protein cytoplasmic 4* / poly(A) binding protein cytoplasmic 4 like*ENSDARG0000005925915
elavl3 / ELAV like neuron-specific RNA binding protein 3 / Q60900* / Q14576* / ELAV-like protein 3 * / ELAV like RNA binding protein 3*ENSDARG0000001442014
elavl4 / ELAV like neuron-specific RNA binding protein 4 / P26378* / Q61701* / ELAV like RNA binding protein 4* / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA.*ENSDARG0000004563914
elavl2 / ELAV like neuron-specific RNA binding protein 2 / Q12926* / Q60899* / ELAV like RNA binding protein 2* / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA.*ENSDARG0000004073214
rbms3 / RNA binding motif, single stranded interacting protein / Q6XE24* / Q8BWL5* / RNA binding motif single stranded interacting protein 3*ENSDARG0000004457414
rbms2a / RNA binding motif, single stranded interacting protein 2a / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2*ENSDARG0000004417913
pabpc1l / poly(A) binding protein, cytoplasmic 1-like / Q4VXU2*ENSDARG0000000259713
rbms1a / RNA binding motif, single stranded interacting protein 1a / RBMS1* / Q91W59* / P29558* / RNA binding motif single stranded interacting protein 1*ENSDARG0000007402313
elavl1b / ELAV like RNA binding protein 1b / Q15717* / P70372* / ELAVL1* / ELAV-like protein 1 * / ELAV like RNA binding protein 1*ENSDARG0000010174413
rbms2b / RNA binding motif, single stranded interacting protein 2b / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2*ENSDARG0000005615013
elavl1a / ELAV like RNA binding protein 1a / Q15717* / P70372* / ELAVL1* / ELAV-like protein 1 * / ELAV like RNA binding protein 1*ENSDARG0000003869513
RBMS1 (1 of many) / RNA binding motif single stranded interacting protein 1 / RBMS1* / P29558*ENSDARG000001038238


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006532  Poly-U binding splicing factor, half-pint
 IPR034209  PUF60, RNA recognition motif 1
 IPR034211  PUF60, RNA recognition motif 2
 IPR034212  PUF60, RNA recognition motif 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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