ENSG00000179950


Homo sapiens

Features
Gene ID: ENSG00000179950
  
Biological name :PUF60
  
Synonyms : poly(U) binding splicing factor 60 / PUF60 / Q9UHX1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: q24.3
Gene start: 143816344
Gene end: 143829859
  
Corresponding Affymetrix probe sets: 209899_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000433403
Ensembl peptide - ENSP00000432610
Ensembl peptide - ENSP00000434359
Ensembl peptide - ENSP00000437309
Ensembl peptide - ENSP00000436131
Ensembl peptide - ENSP00000434863
Ensembl peptide - ENSP00000322016
Ensembl peptide - ENSP00000322036
Ensembl peptide - ENSP00000395417
Ensembl peptide - ENSP00000402953
Ensembl peptide - ENSP00000431960
Ensembl peptide - ENSP00000432091
NCBI entrez gene - 22827     See in Manteia.
OMIM - 604819
RefSeq - XM_017013240
RefSeq - NM_001271096
RefSeq - NM_001271097
RefSeq - NM_001271098
RefSeq - NM_001271099
RefSeq - NM_001271100
RefSeq - NM_014281
RefSeq - NM_078480
RefSeq - XM_011516929
RefSeq - XM_011516930
RefSeq - XM_017013234
RefSeq - XM_017013235
RefSeq - XM_017013236
RefSeq - XM_017013237
RefSeq - XM_017013238
RefSeq - XM_017013239
RefSeq - NM_001136033
RefSeq Peptide - NP_001258025
RefSeq Peptide - NP_001258026
RefSeq Peptide - NP_001258027
RefSeq Peptide - NP_001258028
RefSeq Peptide - NP_001258029
RefSeq Peptide - NP_055096
RefSeq Peptide - NP_510965
RefSeq Peptide - NP_001129505
swissprot - E9PN18
swissprot - E9PMU7
swissprot - H0YCP8
swissprot - H0YEM1
swissprot - Q9UHX1
swissprot - E9PL19
swissprot - E9PQ56
Ensembl - ENSG00000179950
  
Related genetic diseases (OMIM): 615583 - Verheij syndrome, 615583
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 puf60aENSDARG00000032175Danio rerio
 puf60bENSDARG00000001241Danio rerio
 PUF60ENSGALG00000039901Gallus gallus
 Puf60ENSMUSG00000002524Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBMS3 / Q6XE24 / RNA binding motif single stranded interacting protein 3ENSG0000014464215
PABPC4 / Q13310 / poly(A) binding protein cytoplasmic 4ENSG0000009062115
PABPC3 / Q9H361 / poly(A) binding protein cytoplasmic 3ENSG0000015184615
RBMS2 / Q15434 / RNA binding motif single stranded interacting protein 2ENSG0000007606715
P11940 / PABPC1 / poly(A) binding protein cytoplasmic 1ENSG0000007075615
ELAVL4 / P26378 / ELAV like RNA binding protein 4ENSG0000016237414
Q4VXU2 / PABPC1L / poly(A) binding protein cytoplasmic 1 likeENSG0000010110414
ELAVL3 / Q14576 / ELAV like RNA binding protein 3ENSG0000019636114
RBMS1 / P29558 / RNA binding motif single stranded interacting protein 1ENSG0000015325014
ELAVL2 / Q12926 / ELAV like RNA binding protein 2ENSG0000010710514
ELAVL1 / Q15717 / ELAV like RNA binding protein 1ENSG0000006604413
P0CB38 / PABPC4L / poly(A) binding protein cytoplasmic 4 likeENSG000002545359
PABPC5 / Q96DU9 / poly(A) binding protein cytoplasmic 5ENSG000001747409
Q5JQF8 / PABPC1L2A / poly(A) binding protein cytoplasmic 1 like 2AENSG000001862882
Q5JQF8 / PABPC1L2B / poly(A) binding protein cytoplasmic 1 like 2BENSG000001843882


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006532  Poly-U binding splicing factor, half-pint
 IPR034209  PUF60, RNA recognition motif 1
 IPR034211  PUF60, RNA recognition motif 2
 IPR034212  PUF60, RNA recognition motif 3
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0019907 cyclin-dependent protein kinase activating kinase holoenzyme complex IDA
 cellular_componentGO:0030054 cell junction IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0045296 cadherin binding IDA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000089 Renal hypoplasia 
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 HP:0000104 Renal agenesis 
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 HP:0000107 Renal cysts 
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 HP:0000219 Thin upper lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000589 Coloboma "A developmental defect characterized by a cleft of some portion of the `eye` (FMA:54448`) or ocular adnexa." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001671 Abnormality of the cardiac septa 
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 HP:0002059 Cerebral atrophy 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002827 Dislocated hips 
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 HP:0002937 Hemivertebrae 
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 HP:0002948 Vertebral fusion "A developmental defect leading to the union of two adjacent vertebrae." [HPO:curators]
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003577 Onset at birth 
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 HP:0003812 Phenotypic variability 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0009237 Hypoplastic/small 5th finger "Hypoplastic/small 5th (little) finger." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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