ENSGALG00000039901


Gallus gallus

Features
Gene ID: ENSGALG00000039901
  
Biological name :PUF60
  
Synonyms : poly(U)-binding-splicing factor PUF60 / PUF60
  
Possible biological names infered from orthology : poly(U) binding splicing factor 60 / Q3UEB3 / Q9UHX1
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 149440993
Gene end: 149468746
  
Corresponding Affymetrix probe sets: Gga.18735.1.A1_at (Chicken Array)   Gga.18735.1.S1_at (Chicken Array)   Gga.5244.1.S1_at (Chicken Array)   Gga.5244.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044204
Ensembl peptide - ENSGALP00000064791
Ensembl peptide - ENSGALP00000048965
Ensembl peptide - ENSGALP00000048877
NCBI entrez gene - 426402     See in Manteia.
RefSeq - XM_015283243
RefSeq - XM_015283247
RefSeq - XM_015283246
RefSeq - XM_015283245
RefSeq - NM_001031380
RefSeq - XM_015283244
RefSeq Peptide - NP_001026551
swissprot - A0A1L1S0Y2
swissprot - A0A1D5NV31
swissprot - A0A1D5P832
swissprot - A0A1D5P8B9
Ensembl - ENSGALG00000039901
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 puf60aENSDARG00000032175Danio rerio
 puf60bENSDARG00000001241Danio rerio
 PUF60ENSG00000179950Homo sapiens
 Puf60ENSMUSG00000002524Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PABPC1 / polyadenylate-binding protein 1 / PABPC3* / Q9H361* / P11940* / P29341* / poly(A) binding protein cytoplasmic 3* / poly(A) binding protein cytoplasmic 1*ENSGALG0000003028016
Q13310* / P0CB38* / PABPC4* / PABPC4L* / poly(A) binding protein cytoplasmic 4* / poly(A) binding protein cytoplasmic 4 like*ENSGALG0000000380016
PABPC1L / poly(A) binding protein cytoplasmic 1 like / Q4VXU2*ENSGALG0000000412315
RBMS2 / RNA binding motif single stranded interacting protein 2 / Q15434* / Q8VC70*ENSGALG0000003875715
ELAVL2 / ELAV like RNA binding protein 2 / Q12926* / Q60899* / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA.*ENSGALG0000001579915
ELAVL4 / ELAV-like protein 4 / P26378* / Q61701* / ELAV like RNA binding protein 4* / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA.*ENSGALG0000001053315
RBMS1 / RNA binding motif single stranded interacting protein 1 / P29558* / Q91W59*ENSGALG0000001113215
ELAVL1 / ELAV-like protein 1 / P70372* / Q15717* / ELAV like RNA binding protein 1*ENSGALG0000000072614
RBMS3 / RNA binding motif single stranded interacting protein 3 / Q6XE24* / Q8BWL5* / RNA binding motif, single stranded interacting protein*ENSGALG0000001143910
ENSGALG000000382596


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006532  Poly-U binding splicing factor, half-pint
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0019907 cyclin-dependent protein kinase activating kinase holoenzyme complex IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0045296 cadherin binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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