Manteia

ENSGALG00000030280

Gallus gallus

Features

Gene ID:	ENSGALG00000030280

Biological name :	PABPC1

Synonyms :	PABPC1 / polyadenylate-binding protein 1

Possible biological names infered from orthology :	P11940 / P29341 / PABPC3 / poly(A) binding protein cytoplasmic 1 / poly(A) binding protein cytoplasmic 3 / Q9H361

Species:	Gallus gallus

Chr. number:	2
Strand:	-1
Band:
Gene start:	129199347
Gene end:	129213966

Corresponding Affymetrix probe sets:	Gga.4666.1.S1_s_at (Chicken Array) GgaAffx.9197.1.S1_at (Chicken Array)

Cross references:	Ensembl peptide - ENSGALP00000045369 Ensembl peptide - ENSGALP00000063445 Ensembl peptide - ENSGALP00000063216 Ensembl peptide - ENSGALP00000061037 Ensembl peptide - ENSGALP00000057021 NCBI entrez gene - 430997 See in Manteia. RefSeq - NM_001031597 RefSeq Peptide - NP_001026768 swissprot - A0A1L1RQG9 swissprot - A0A1L1RX80 swissprot - A0A1D5NYB2 swissprot - A0A1D5PVP6 swissprot - A0A1L1RWK3 Ensembl - ENSGALG00000030280

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
Q13310* / P0CB38* / PABPC4* / PABPC4L* / poly(A) binding protein cytoplasmic 4* / poly(A) binding protein cytoplasmic 4 like*	ENSGALG00000003800	79
PABPC1L / poly(A) binding protein cytoplasmic 1 like / Q4VXU2*	ENSGALG00000004123	74
RBMS1 / RNA binding motif single stranded interacting protein 1 / P29558* / Q91W59*	ENSGALG00000011132	16
RBMS2 / RNA binding motif single stranded interacting protein 2 / Q15434* / Q8VC70*	ENSGALG00000038757	15
PUF60 / poly(U)-binding-splicing factor PUF60 / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60*	ENSGALG00000039901	14
ELAVL2 / ELAV like RNA binding protein 2 / Q12926* / Q60899* / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA.*	ENSGALG00000015799	13
ELAVL4 / ELAV-like protein 4 / P26378* / Q61701* / ELAV like RNA binding protein 4* / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA.*	ENSGALG00000010533	13
ELAVL1 / ELAV-like protein 1 / P70372* / Q15717* / ELAV like RNA binding protein 1*	ENSGALG00000000726	11
RBMS3 / RNA binding motif single stranded interacting protein 3 / Q6XE24* / Q8BWL5* / RNA binding motif, single stranded interacting protein*	ENSGALG00000011439	11
	ENSGALG00000038259	7

Protein motifs (from Interpro)

Interpro ID	Name
IPR000504	RNA recognition motif domain
IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein
IPR003954	RNA recognition motif domain, eukaryote
IPR006515	Polyadenylate binding protein, human types 1, 2, 3, 4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0031047	gene silencing by RNA	IEA
biological_process	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	IEA
biological_process	GO:1900153	positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IEA
cellular_component	GO:0005737	cytoplasm	IEA
molecular_function	GO:0003676	nucleic acid binding	IEA
molecular_function	GO:0003723	RNA binding	IEA

Pathways (from Reactome)

Pathway description

Deadenylation of mRNA

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

External programs and data are copyrighted by and are the property of their respective authors. The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation
		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr