ENSGALG00000004123


Gallus gallus

Features
Gene ID: ENSGALG00000004123
  
Biological name :PABPC1L
  
Synonyms : PABPC1L / poly(A) binding protein cytoplasmic 1 like
  
Possible biological names infered from orthology : Q4VXU2
  
Species: Gallus gallus
  
Chr. number: 20
Strand: -1
Band:
Gene start: 5378064
Gene end: 5387076
  
Corresponding Affymetrix probe sets: GgaAffx.2559.1.S1_at (Chicken Array)   GgaAffx.2559.2.S1_at (Chicken Array)   GgaAffx.2559.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000006555
Ensembl peptide - ENSGALP00000051919
NCBI entrez gene - 419189     See in Manteia.
RefSeq - XM_015296733
swissprot - A0A1D5PGJ6
swissprot - E1BWJ7
Ensembl - ENSGALG00000004123
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pabpc1lENSDARG00000002597Danio rerio
 Q4VXU2ENSG00000101104Homo sapiens
 Pabpc1lENSMUSG00000054582Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PABPC1 / polyadenylate-binding protein 1 / PABPC3* / Q9H361* / P11940* / P29341* / poly(A) binding protein cytoplasmic 3* / poly(A) binding protein cytoplasmic 1*ENSGALG0000003028074
Q13310* / P0CB38* / PABPC4* / PABPC4L* / poly(A) binding protein cytoplasmic 4* / poly(A) binding protein cytoplasmic 4 like*ENSGALG0000000380071
RBMS2 / RNA binding motif single stranded interacting protein 2 / Q15434* / Q8VC70*ENSGALG0000003875714
RBMS1 / RNA binding motif single stranded interacting protein 1 / P29558* / Q91W59*ENSGALG0000001113214
PUF60 / poly(U)-binding-splicing factor PUF60 / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60*ENSGALG0000003990112
ELAVL4 / ELAV-like protein 4 / P26378* / Q61701* / ELAV like RNA binding protein 4* / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA.*ENSGALG0000001053311
ELAVL2 / ELAV like RNA binding protein 2 / Q12926* / Q60899* / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA.*ENSGALG0000001579911
RBMS3 / RNA binding motif single stranded interacting protein 3 / Q6XE24* / Q8BWL5* / RNA binding motif, single stranded interacting protein*ENSGALG0000001143910
ELAVL1 / ELAV-like protein 1 / P70372* / Q15717* / ELAV like RNA binding protein 1*ENSGALG0000000072610
ENSGALG000000382597


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002004  Polyadenylate-binding protein/Hyperplastic disc protein
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006515  Polyadenylate binding protein, human types 1, 2, 3, 4
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001556 oocyte maturation IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006378 mRNA polyadenylation IEA
 biological_processGO:0048096 chromatin-mediated maintenance of transcription IEA
 biological_processGO:0051647 nucleus localization IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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