ENSGALG00000011439


Gallus gallus

Features
Gene ID: ENSGALG00000011439
  
Biological name :RBMS3
  
Synonyms : RBMS3 / RNA binding motif single stranded interacting protein 3
  
Possible biological names infered from orthology : Q6XE24 / Q8BWL5 / RNA binding motif, single stranded interacting protein
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 39599323
Gene end: 39739638
  
Corresponding Affymetrix probe sets: GgaAffx.7257.1.S1_s_at (Chicken Array)   GgaAffx.7257.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000036897
NCBI entrez gene - 420661     See in Manteia.
RefSeq - XM_015281787
RefSeq - XM_418760
swissprot - E1C5D8
Ensembl - ENSGALG00000011439
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbms3ENSDARG00000044574Danio rerio
 RBMS3ENSG00000144642Homo sapiens
 Rbms3ENSMUSG00000039607Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBMS1 / RNA binding motif single stranded interacting protein 1 / P29558* / Q91W59*ENSGALG0000001113271
RBMS2 / RNA binding motif single stranded interacting protein 2 / Q15434* / Q8VC70*ENSGALG0000003875754
PABPC1 / polyadenylate-binding protein 1 / PABPC3* / Q9H361* / P11940* / P29341* / poly(A) binding protein cytoplasmic 3* / poly(A) binding protein cytoplasmic 1*ENSGALG0000003028023
ELAVL4 / ELAV-like protein 4 / P26378* / Q61701* / ELAV like RNA binding protein 4* / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA.*ENSGALG0000001053322
Q13310* / P0CB38* / PABPC4* / PABPC4L* / poly(A) binding protein cytoplasmic 4* / poly(A) binding protein cytoplasmic 4 like*ENSGALG0000000380022
PABPC1L / poly(A) binding protein cytoplasmic 1 like / Q4VXU2*ENSGALG0000000412321
ELAVL2 / ELAV like RNA binding protein 2 / Q12926* / Q60899* / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA.*ENSGALG0000001579921
ELAVL1 / ELAV-like protein 1 / P70372* / Q15717* / ELAV like RNA binding protein 1*ENSGALG0000000072620
PUF60 / poly(U)-binding-splicing factor PUF60 / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60*ENSGALG0000003990118
ENSGALG000000382594


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002343  Paraneoplastic encephalomyelitis antigen
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002357 defense response to tumor cell IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0010629 negative regulation of gene expression IEA
 biological_processGO:0045727 positive regulation of translation IEA
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0008143 poly(A) binding IEA
 molecular_functionGO:0008266 poly(U) RNA binding IEA
 molecular_functionGO:0035925 mRNA 3"-UTR AU-rich region binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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