ENSMUSG00000039607


Mus musculus

Features
Gene ID: ENSMUSG00000039607
  
Biological name :Rbms3
  
Synonyms : Q8BWL5 / Rbms3 / RNA binding motif, single stranded interacting protein
  
Possible biological names infered from orthology : Q6XE24 / RNA binding motif single stranded interacting protein 3
  
Species: Mus musculus
  
Chr. number: 9
Strand: -1
Band: F3
Gene start: 116572746
Gene end: 117629913
  
Corresponding Affymetrix probe sets: 10597531 (MoGene1.0st)   1436937_at (Mouse Genome 430 2.0 Array)   1436938_at (Mouse Genome 430 2.0 Array)   1452761_a_at (Mouse Genome 430 2.0 Array)   1452762_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000134528
Ensembl peptide - ENSMUSP00000039706
Ensembl peptide - ENSMUSP00000066735
Ensembl peptide - ENSMUSP00000107402
Ensembl peptide - ENSMUSP00000107403
Ensembl peptide - ENSMUSP00000131371
Ensembl peptide - ENSMUSP00000133621
Ensembl peptide - ENSMUSP00000133900
Ensembl peptide - ENSMUSP00000134172
NCBI entrez gene - 207181     See in Manteia.
MGI - MGI:2444477
RefSeq - XM_017313253
RefSeq - NM_001172123
RefSeq - NM_001172124
RefSeq - NM_001172126
RefSeq - NM_178660
RefSeq - XM_017313243
RefSeq - XM_017313245
RefSeq - XM_017313247
RefSeq - XM_017313248
RefSeq - XM_017313251
RefSeq - XM_017313252
RefSeq - NM_001172121
RefSeq - NM_001172122
RefSeq Peptide - NP_001165593
RefSeq Peptide - NP_001165595
RefSeq Peptide - NP_001165597
RefSeq Peptide - NP_848775
RefSeq Peptide - NP_001165592
RefSeq Peptide - NP_001165594
swissprot - G3UYP9
swissprot - G3UZJ9
swissprot - Q8BWL5
swissprot - G3UY10
Ensembl - ENSMUSG00000039607
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbms3ENSDARG00000044574Danio rerio
 RBMS3ENSGALG00000011439Gallus gallus
 RBMS3ENSG00000144642Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rbms1 / Q91W59 / RNA-binding motif, single-stranded-interacting protein 1 / P29558*ENSMUSG0000002697059
Rbms2 / Q8VC70 / RNA-binding motif, single-stranded-interacting protein 2 / Q15434*ENSMUSG0000004004355
Elavl3 / Q60900 / ELAV-like protein 3 / Q14576* / ELAV like RNA binding protein 3*ENSMUSG0000000341021
P29341 / Pabpc1 / Polyadenylate-binding protein 1 ENSMUSG0000002228321
Pabpc2 / P11940* / PABPC1* / poly(A) binding protein cytoplasmic 1*ENSMUSG0000005173220
Elavl4 / Q61701 / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA. / P26378* / ELAV like RNA binding protein 4*ENSMUSG0000002854620
Elavl2 / Q60899 / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA. / Q12926* / ELAV like RNA binding protein 2*ENSMUSG0000000848920
Pabpc4 / poly(A) binding protein, cytoplasmic 4 / Q13310*ENSMUSG0000001125720
Pabpc6ENSMUSG0000004617320
Elavl1 / P70372 / ELAV-like protein 1 / Q15717* / ELAV like RNA binding protein 1*ENSMUSG0000004002819
Puf60 / Q3UEB3 / Poly(U)-binding-splicing factor PUF60 / Q9UHX1* / poly(U) binding splicing factor 60*ENSMUSG0000000252418
Pabpc1l / poly(A) binding protein, cytoplasmic 1-like / Q4VXU2*ENSMUSG0000005458216
Pabpc4l / poly(A) binding protein cytoplasmic 4 like / P0CB38*ENSMUSG0000009091912
Pabpc5 / poly(A) binding protein cytoplasmic 5 / Q96DU9*ENSMUSG0000003473211


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002343  Paraneoplastic encephalomyelitis antigen
 IPR034406  RBMS3, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002357 defense response to tumor cell ISO
 biological_processGO:0010628 positive regulation of gene expression ISO
 biological_processGO:0010629 negative regulation of gene expression ISO
 biological_processGO:0045727 positive regulation of translation IDA
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway ISO
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IDA
 molecular_functionGO:0008143 poly(A) binding ISO
 molecular_functionGO:0008266 poly(U) RNA binding ISO
 molecular_functionGO:0035925 mRNA 3"-UTR AU-rich region binding ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr