ENSMUSG00000090919


Mus musculus

Features
Gene ID: ENSMUSG00000090919
  
Biological name :Pabpc4l
  
Synonyms : Pabpc4l / poly(A) binding protein cytoplasmic 4 like
  
Possible biological names infered from orthology : P0CB38
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: B
Gene start: 46442197
Gene end: 46448219
  
Corresponding Affymetrix probe sets: 10497994 (MoGene1.0st)   1431353_at (Mouse Genome 430 2.0 Array)   1438455_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000141300
Ensembl peptide - ENSMUSP00000141854
Ensembl peptide - ENSMUSP00000141684
Ensembl peptide - ENSMUSP00000126224
NCBI entrez gene - 241989     See in Manteia.
MGI - MGI:3643087
RefSeq - NM_001101479
RefSeq - XM_011239969
RefSeq Peptide - NP_001094949
swissprot - A0A0A6YWT2
swissprot - G5E8X2
swissprot - A0A0A6YX62
Ensembl - ENSMUSG00000090919
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pabpc4ENSDARG00000059259Danio rerio
 ENSGALG00000003800Gallus gallus
 P0CB38ENSG00000254535Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pabpc4 / poly(A) binding protein, cytoplasmic 4 / Q13310*ENSMUSG0000001125768
P29341 / Pabpc1 / Polyadenylate-binding protein 1 ENSMUSG0000002228366
Pabpc6ENSMUSG0000004617363
Pabpc2 / P11940* / PABPC1* / poly(A) binding protein cytoplasmic 1*ENSMUSG0000005173263
Pabpc1l / poly(A) binding protein, cytoplasmic 1-like / Q4VXU2*ENSMUSG0000005458257
Pabpc5 / poly(A) binding protein cytoplasmic 5 / Q96DU9*ENSMUSG0000003473257
Rbms2 / Q8VC70 / RNA-binding motif, single-stranded-interacting protein 2 / Q15434*ENSMUSG0000004004315
Rbms1 / Q91W59 / RNA-binding motif, single-stranded-interacting protein 1 / P29558*ENSMUSG0000002697015
Rbms3 / Q8BWL5 / RNA binding motif, single stranded interacting protein / Q6XE24* / RNA binding motif single stranded interacting protein 3*ENSMUSG0000003960715
Puf60 / Q3UEB3 / Poly(U)-binding-splicing factor PUF60 / Q9UHX1* / poly(U) binding splicing factor 60*ENSMUSG0000000252414
Elavl4 / Q61701 / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA. / P26378* / ELAV like RNA binding protein 4*ENSMUSG0000002854614
Elavl2 / Q60899 / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA. / Q12926* / ELAV like RNA binding protein 2*ENSMUSG0000000848914
Elavl1 / P70372 / ELAV-like protein 1 / Q15717* / ELAV like RNA binding protein 1*ENSMUSG0000004002813
Elavl3 / Q60900 / ELAV-like protein 3 / Q14576* / ELAV like RNA binding protein 3*ENSMUSG0000000341012


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006515  Polyadenylate binding protein, human types 1, 2, 3, 4
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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