ENSMUSG00000002524


Mus musculus

Features
Gene ID: ENSMUSG00000002524
  
Biological name :Puf60
  
Synonyms : Poly(U)-binding-splicing factor PUF60 / Puf60 / Q3UEB3
  
Possible biological names infered from orthology : poly(U) binding splicing factor 60 / Q9UHX1
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: D3
Gene start: 76070182
Gene end: 76080924
  
Corresponding Affymetrix probe sets: 10429739 (MoGene1.0st)   1416438_at (Mouse Genome 430 2.0 Array)   1430705_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000002599
Ensembl peptide - ENSMUSP00000098096
Ensembl peptide - ENSMUSP00000154177
Ensembl peptide - ENSMUSP00000155707
NCBI entrez gene - 67959     See in Manteia.
MGI - MGI:1915209
RefSeq - XM_006521305
RefSeq - NM_001164600
RefSeq - NM_028364
RefSeq - NM_133691
RefSeq - XM_006521302
RefSeq - XM_006521303
RefSeq - XM_006521304
RefSeq Peptide - NP_001158072
RefSeq Peptide - NP_082640
RefSeq Peptide - NP_598452
swissprot - Q3UEB3
Ensembl - ENSMUSG00000002524
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 puf60aENSDARG00000032175Danio rerio
 puf60bENSDARG00000001241Danio rerio
 PUF60ENSGALG00000039901Gallus gallus
 PUF60ENSG00000179950Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Elavl4 / Q61701 / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA. / P26378* / ELAV like RNA binding protein 4*ENSMUSG0000002854615
Elavl3 / Q60900 / ELAV-like protein 3 / Q14576* / ELAV like RNA binding protein 3*ENSMUSG0000000341015
P29341 / Pabpc1 / Polyadenylate-binding protein 1 ENSMUSG0000002228315
Pabpc4 / poly(A) binding protein, cytoplasmic 4 / Q13310*ENSMUSG0000001125715
Elavl2 / Q60899 / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA. / Q12926* / ELAV like RNA binding protein 2*ENSMUSG0000000848915
Rbms3 / Q8BWL5 / RNA binding motif, single stranded interacting protein / Q6XE24* / RNA binding motif single stranded interacting protein 3*ENSMUSG0000003960715
Pabpc2 / P11940* / PABPC1* / poly(A) binding protein cytoplasmic 1*ENSMUSG0000005173214
Pabpc6ENSMUSG0000004617314
Rbms1 / Q91W59 / RNA-binding motif, single-stranded-interacting protein 1 / P29558*ENSMUSG0000002697014
Pabpc1l / poly(A) binding protein, cytoplasmic 1-like / Q4VXU2*ENSMUSG0000005458214
Rbms2 / Q8VC70 / RNA-binding motif, single-stranded-interacting protein 2 / Q15434*ENSMUSG0000004004314
Elavl1 / P70372 / ELAV-like protein 1 / Q15717* / ELAV like RNA binding protein 1*ENSMUSG0000004002813
Pabpc5 / poly(A) binding protein cytoplasmic 5 / Q96DU9*ENSMUSG000000347329
Pabpc4l / poly(A) binding protein cytoplasmic 4 like / P0CB38*ENSMUSG000000909199


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006532  Poly-U binding splicing factor, half-pint
 IPR034209  PUF60, RNA recognition motif 1
 IPR034211  PUF60, RNA recognition motif 2
 IPR034212  PUF60, RNA recognition motif 3
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0019907 cyclin-dependent protein kinase activating kinase holoenzyme complex ISO
 cellular_componentGO:0030054 cell junction ISO
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0042802 identical protein binding ISO
 molecular_functionGO:0045296 cadherin binding ISO


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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