Manteia

ENSDARG00000032175

Danio rerio

Features

Gene ID:	ENSDARG00000032175

Biological name :	puf60a

Synonyms :	poly-U binding splicing factor a / puf60a

Possible biological names infered from orthology :	poly(U) binding splicing factor 60 / Poly(U)-binding-splicing factor PUF60 / PUF60 / Q3UEB3 / Q9UHX1

Species:	Danio rerio

Chr. number:	2
Strand:	-1
Band:
Gene start:	32650729
Gene end:	32671854

Corresponding Affymetrix probe sets:	Dr.10578.1.A1_at (Zebrafish Array)

Cross references:	Ensembl peptide - ENSDARP00000150778 Ensembl peptide - ENSDARP00000152687 Ensembl peptide - ENSDARP00000150823 Ensembl peptide - ENSDARP00000056644 Ensembl peptide - ENSDARP00000106172 Ensembl peptide - ENSDARP00000115451 Ensembl peptide - ENSDARP00000118050 Ensembl peptide - ENSDARP00000119093 Ensembl peptide - ENSDARP00000120779 Ensembl peptide - ENSDARP00000120851 Ensembl peptide - ENSDARP00000121317 Ensembl peptide - ENSDARP00000123334 NCBI entrez gene - 562370 See in Manteia. RefSeq - NM_001105588 RefSeq Peptide - NP_001099058 swissprot - F1QB76 swissprot - F1QZ57 swissprot - F6NPA6 swissprot - F6NQ93 swissprot - F6NTM3 swissprot - F6P3Y7 swissprot - E7FE61 swissprot - B0S627 ZFIN ID - ZDB-GENE-030131-2891 Ensembl - ENSDARG00000032175

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
PUF60	ENSGALG00000039901	Gallus gallus
PUF60	ENSG00000179950	Homo sapiens
Puf60	ENSMUSG00000002524	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
Q6IQE0 / puf60b / poly-U binding splicing factor b / PUF60* / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60* / Poly(U)-binding-splicing factor PUF60 *	ENSDARG00000001241	80
elavl3 / ELAV like neuron-specific RNA binding protein 3 / Q60900* / Q14576* / ELAV-like protein 3 * / ELAV like RNA binding protein 3*	ENSDARG00000014420	17
elavl2 / ELAV like neuron-specific RNA binding protein 2 / Q12926* / Q60899* / ELAV like RNA binding protein 2* / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA.*	ENSDARG00000040732	16
pabpc1a / poly(A) binding protein, cytoplasmic 1a / PABPC1* / Pabpc2* / PABPC3* / Pabpc6* / Q9H361* / P11940* / P29341* / Polyadenylate-binding protein 1 * / poly(A) binding protein cytopla...	ENSDARG00000017219	16
pabpc4 / poly(A) binding protein, cytoplasmic 4 (inducible form) / Q13310* / P0CB38* / PABPC4L* / poly(A) binding protein cytoplasmic 4* / poly(A) binding protein cytoplasmic 4 like*	ENSDARG00000059259	16
elavl1a / ELAV like RNA binding protein 1a / Q15717* / P70372* / ELAVL1* / ELAV-like protein 1 * / ELAV like RNA binding protein 1*	ENSDARG00000038695	16
elavl4 / ELAV like neuron-specific RNA binding protein 4 / P26378* / Q61701* / ELAV like RNA binding protein 4* / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA.*	ENSDARG00000045639	16
rbms3 / RNA binding motif, single stranded interacting protein / Q6XE24* / Q8BWL5* / RNA binding motif single stranded interacting protein 3*	ENSDARG00000044574	15
elavl1b / ELAV like RNA binding protein 1b / Q15717* / P70372* / ELAVL1* / ELAV-like protein 1 * / ELAV like RNA binding protein 1*	ENSDARG00000101744	15
pabpc1l / poly(A) binding protein, cytoplasmic 1-like / Q4VXU2*	ENSDARG00000002597	15
pabpc1b / poly A binding protein, cytoplasmic 1 b / PABPC1* / Pabpc2* / PABPC3* / Pabpc6* / Q9H361* / P11940* / P29341* / Polyadenylate-binding protein 1 * / poly(A) binding protein cytopla...	ENSDARG00000021140	15
rbms2b / RNA binding motif, single stranded interacting protein 2b / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2*	ENSDARG00000056150	13
rbms1a / RNA binding motif, single stranded interacting protein 1a / RBMS1* / Q91W59* / P29558* / RNA binding motif single stranded interacting protein 1*	ENSDARG00000074023	13
rbms2a / RNA binding motif, single stranded interacting protein 2a / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2*	ENSDARG00000044179	13
RBMS1 (1 of many) / RNA binding motif single stranded interacting protein 1 / RBMS1* / P29558*	ENSDARG00000103823	8

Protein motifs (from Interpro)

Interpro ID	Name
IPR000504	RNA recognition motif domain
IPR003954	RNA recognition motif domain, eukaryote
IPR006532	Poly-U binding splicing factor, half-pint
IPR034209	PUF60, RNA recognition motif 1
IPR034211	PUF60, RNA recognition motif 2
IPR034212	PUF60, RNA recognition motif 3

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
molecular_function	GO:0003676	nucleic acid binding	IEA
molecular_function	GO:0003723	RNA binding	IEA

Pathways (from Reactome)

Pathway description

mRNA Splicing - Major Pathway

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

1 s.

External programs and data are copyrighted by and are the property of their respective authors. The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation
		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr