ENSDARG00000059259


Danio rerio

Features
Gene ID: ENSDARG00000059259
  
Biological name :pabpc4
  
Synonyms : pabpc4 / poly(A) binding protein, cytoplasmic 4 (inducible form)
  
Possible biological names infered from orthology : P0CB38 / PABPC4L / poly(A) binding protein cytoplasmic 4 / poly(A) binding protein cytoplasmic 4 like / Q13310
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 25303671
Gene end: 25326685
  
Corresponding Affymetrix probe sets: Dr.16284.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000076763
Ensembl peptide - ENSDARP00000140050
NCBI entrez gene - 321035     See in Manteia.
swissprot - F1QUU2
swissprot - Q7T3G5
ZFIN ID - ZDB-GENE-030131-9663
Ensembl - ENSDARG00000059259
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000003800Gallus gallus
 P0CB38ENSG00000254535Homo sapiens
 PABPC4ENSG00000090621Homo sapiens
 Pabpc4ENSMUSG00000011257Mus musculus
 Pabpc4lENSMUSG00000090919Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pabpc1b / poly A binding protein, cytoplasmic 1 b / PABPC1* / Pabpc2* / PABPC3* / Pabpc6* / Q9H361* / P11940* / P29341* / Polyadenylate-binding protein 1 * / poly(A) binding protein cytopla...ENSDARG0000002114076
pabpc1a / poly(A) binding protein, cytoplasmic 1a / PABPC1* / Pabpc2* / PABPC3* / Pabpc6* / Q9H361* / P11940* / P29341* / Polyadenylate-binding protein 1 * / poly(A) binding protein cytopla...ENSDARG0000001721976
pabpc1l / poly(A) binding protein, cytoplasmic 1-like / Q4VXU2*ENSDARG0000000259767
rbms3 / RNA binding motif, single stranded interacting protein / Q6XE24* / Q8BWL5* / RNA binding motif single stranded interacting protein 3*ENSDARG0000004457416
rbms2b / RNA binding motif, single stranded interacting protein 2b / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2*ENSDARG0000005615016
rbms2a / RNA binding motif, single stranded interacting protein 2a / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2*ENSDARG0000004417915
rbms1a / RNA binding motif, single stranded interacting protein 1a / RBMS1* / Q91W59* / P29558* / RNA binding motif single stranded interacting protein 1*ENSDARG0000007402315
puf60a / poly-U binding splicing factor a / PUF60* / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60* / Poly(U)-binding-splicing factor PUF60 *ENSDARG0000003217513
elavl1b / ELAV like RNA binding protein 1b / Q15717* / P70372* / ELAVL1* / ELAV-like protein 1 * / ELAV like RNA binding protein 1*ENSDARG0000010174412
elavl1a / ELAV like RNA binding protein 1a / Q15717* / P70372* / ELAVL1* / ELAV-like protein 1 * / ELAV like RNA binding protein 1*ENSDARG0000003869512
Q6IQE0 / puf60b / poly-U binding splicing factor b / PUF60* / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60* / Poly(U)-binding-splicing factor PUF60 *ENSDARG0000000124112
elavl4 / ELAV like neuron-specific RNA binding protein 4 / P26378* / Q61701* / ELAV like RNA binding protein 4* / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA.*ENSDARG0000004563912
elavl2 / ELAV like neuron-specific RNA binding protein 2 / Q12926* / Q60899* / ELAV like RNA binding protein 2* / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA.*ENSDARG0000004073212
elavl3 / ELAV like neuron-specific RNA binding protein 3 / Q60900* / Q14576* / ELAV-like protein 3 * / ELAV like RNA binding protein 3*ENSDARG0000001442011
RBMS1 (1 of many) / RNA binding motif single stranded interacting protein 1 / RBMS1* / P29558*ENSDARG0000010382310


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002004  Polyadenylate-binding protein/Hyperplastic disc protein
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006515  Polyadenylate binding protein, human types 1, 2, 3, 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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