ENSG00000090621


Homo sapiens

Features
Gene ID: ENSG00000090621
  
Biological name :PABPC4
  
Synonyms : PABPC4 / poly(A) binding protein cytoplasmic 4 / Q13310
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p34.3
Gene start: 39560816
Gene end: 39576790
  
Corresponding Affymetrix probe sets: 201064_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000436391
Ensembl peptide - ENSP00000436407
Ensembl peptide - ENSP00000436698
Ensembl peptide - ENSP00000436566
Ensembl peptide - ENSP00000361947
Ensembl peptide - ENSP00000361948
Ensembl peptide - ENSP00000361949
Ensembl peptide - ENSP00000361953
Ensembl peptide - ENSP00000398267
Ensembl peptide - ENSP00000406675
Ensembl peptide - ENSP00000408559
Ensembl peptide - ENSP00000431383
NCBI entrez gene - 8761     See in Manteia.
OMIM - 603407
RefSeq - NM_001135654
RefSeq - NM_003819
RefSeq - NM_001135653
RefSeq Peptide - NP_001129125
RefSeq Peptide - NP_001129126
RefSeq Peptide - NP_003810
swissprot - H0YER0
swissprot - H0YEU6
swissprot - B1ANR1
swissprot - Q13310
swissprot - B1ANR0
swissprot - H0Y5F5
swissprot - H0Y6X6
swissprot - H0YCC8
swissprot - H0YEQ8
Ensembl - ENSG00000090621
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pabpc4ENSDARG00000059259Danio rerio
 ENSGALG00000003800Gallus gallus
 Pabpc4ENSMUSG00000011257Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P11940 / PABPC1 / poly(A) binding protein cytoplasmic 1ENSG0000007075675
PABPC3 / Q9H361 / poly(A) binding protein cytoplasmic 3ENSG0000015184670
Q4VXU2 / PABPC1L / poly(A) binding protein cytoplasmic 1 likeENSG0000010110463
P0CB38 / PABPC4L / poly(A) binding protein cytoplasmic 4 likeENSG0000025453542
PABPC5 / Q96DU9 / poly(A) binding protein cytoplasmic 5ENSG0000017474037
Q5JQF8 / PABPC1L2B / poly(A) binding protein cytoplasmic 1 like 2BENSG0000018438823
Q5JQF8 / PABPC1L2A / poly(A) binding protein cytoplasmic 1 like 2AENSG0000018628823
RBMS3 / Q6XE24 / RNA binding motif single stranded interacting protein 3ENSG0000014464216
RBMS2 / Q15434 / RNA binding motif single stranded interacting protein 2ENSG0000007606715
RBMS1 / P29558 / RNA binding motif single stranded interacting protein 1ENSG0000015325015
ELAVL1 / Q15717 / ELAV like RNA binding protein 1ENSG0000006604412
PUF60 / Q9UHX1 / poly(U) binding splicing factor 60ENSG0000017995012
ELAVL2 / Q12926 / ELAV like RNA binding protein 2ENSG0000010710512
ELAVL4 / P26378 / ELAV like RNA binding protein 4ENSG0000016237412
ELAVL3 / Q14576 / ELAV like RNA binding protein 3ENSG0000019636111


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002004  Polyadenylate-binding protein/Hyperplastic disc protein
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006515  Polyadenylate binding protein, human types 1, 2, 3, 4
 IPR035979  RNA-binding domain superfamily
 IPR036053  PABC (PABP) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing TAS
 biological_processGO:0006401 RNA catabolic process TAS
 biological_processGO:0006412 translation TAS
 biological_processGO:0007596 blood coagulation TAS
 biological_processGO:0043488 regulation of mRNA stability IEA
 biological_processGO:0061515 myeloid cell development IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0010494 cytoplasmic stress granule IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008143 poly(A) binding TAS
 molecular_functionGO:0008266 poly(U) RNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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