ENSG00000151846


Homo sapiens

Features
Gene ID: ENSG00000151846
  
Biological name :PABPC3
  
Synonyms : PABPC3 / poly(A) binding protein cytoplasmic 3 / Q9H361
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: 1
Band: q12.13
Gene start: 25095868
Gene end: 25099254
  
Corresponding Affymetrix probe sets: 208113_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000281589
NCBI entrez gene - 5042     See in Manteia.
OMIM - 604680
RefSeq - NM_030979
RefSeq Peptide - NP_112241
swissprot - Q5VX58
swissprot - Q9H361
Ensembl - ENSG00000151846
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pabpc1aENSDARG00000017219Danio rerio
 pabpc1bENSDARG00000021140Danio rerio
 PABPC1ENSGALG00000030280Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P11940 / PABPC1 / poly(A) binding protein cytoplasmic 1ENSG0000007075693
PABPC4 / Q13310 / poly(A) binding protein cytoplasmic 4ENSG0000009062173
Q4VXU2 / PABPC1L / poly(A) binding protein cytoplasmic 1 likeENSG0000010110465
P0CB38 / PABPC4L / poly(A) binding protein cytoplasmic 4 likeENSG0000025453540
PABPC5 / Q96DU9 / poly(A) binding protein cytoplasmic 5ENSG0000017474036
Q5JQF8 / PABPC1L2B / poly(A) binding protein cytoplasmic 1 like 2BENSG0000018438823
Q5JQF8 / PABPC1L2A / poly(A) binding protein cytoplasmic 1 like 2AENSG0000018628823
RBMS1 / P29558 / RNA binding motif single stranded interacting protein 1ENSG0000015325016
RBMS2 / Q15434 / RNA binding motif single stranded interacting protein 2ENSG0000007606716
RBMS3 / Q6XE24 / RNA binding motif single stranded interacting protein 3ENSG0000014464216
PUF60 / Q9UHX1 / poly(U) binding splicing factor 60ENSG0000017995013
ELAVL4 / P26378 / ELAV like RNA binding protein 4ENSG0000016237413
ELAVL2 / Q12926 / ELAV like RNA binding protein 2ENSG0000010710513
ELAVL3 / Q14576 / ELAV like RNA binding protein 3ENSG0000019636112
ELAVL1 / Q15717 / ELAV like RNA binding protein 1ENSG0000006604411


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002004  Polyadenylate-binding protein/Hyperplastic disc protein
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006515  Polyadenylate binding protein, human types 1, 2, 3, 4
 IPR035979  RNA-binding domain superfamily
 IPR036053  PABC (PABP) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016071 mRNA metabolic process NAS
 cellular_componentGO:0005737 cytoplasm NAS
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008143 poly(A) binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr