ENSDARG00000017219
Danio rerio | |
Features
| Gene ID: | ENSDARG00000017219 | | | | | Biological name : | pabpc1a | | | | | Synonyms : | pabpc1a / poly(A) binding protein, cytoplasmic 1a | | | | | Possible biological names infered from orthology : | P11940 / P29341 / PABPC1 / Pabpc2 / PABPC3 / Pabpc6 / poly(A) binding protein cytoplasmic 1 / poly(A) binding protein cytoplasmic 3 / Polyadenylate-binding protein 1 / Q9H361 | | | | | Species: | Danio rerio | | | | | Chr. number: | 16 | | Strand: | 1 | | Band: | | | Gene start: | 54829284 | | Gene end: | 54851247 | | | | | Corresponding Affymetrix probe sets: | Dr.12233.1.S1_at (Zebrafish Array) Dr.12233.1.S2_a_at (Zebrafish Array) Dr.12233.2.S1_x_at (Zebrafish Array) NM_001031676_at (Zebrafish Genome Array with custom cdf files) | | | | | Cross references: | Ensembl peptide - ENSDARP00000021064
Ensembl peptide - ENSDARP00000124828
NCBI entrez gene - 606498
See in Manteia.
RefSeq - NM_001031676
RefSeq - XM_005169771
RefSeq Peptide - NP_001026846
swissprot - F1QB54
ZFIN ID - ZDB-GENE-030131-3238
Ensembl - ENSDARG00000017219
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See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
| pabpc1b / poly A binding protein, cytoplasmic 1 b / PABPC1* / Pabpc2* / PABPC3* / Pabpc6* / Q9H361* / P11940* / P29341* / Polyadenylate-binding protein 1 * / poly(A) binding protein cytopla... | ENSDARG00000021140 | 92 | | pabpc4 / poly(A) binding protein, cytoplasmic 4 (inducible form) / Q13310* / P0CB38* / PABPC4L* / poly(A) binding protein cytoplasmic 4* / poly(A) binding protein cytoplasmic 4 like* | ENSDARG00000059259 | 77 | | pabpc1l / poly(A) binding protein, cytoplasmic 1-like / Q4VXU2* | ENSDARG00000002597 | 71 | | rbms3 / RNA binding motif, single stranded interacting protein / Q6XE24* / Q8BWL5* / RNA binding motif single stranded interacting protein 3* | ENSDARG00000044574 | 16 | | rbms1a / RNA binding motif, single stranded interacting protein 1a / RBMS1* / Q91W59* / P29558* / RNA binding motif single stranded interacting protein 1* | ENSDARG00000074023 | 16 | | rbms2b / RNA binding motif, single stranded interacting protein 2b / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2* | ENSDARG00000056150 | 15 | | rbms2a / RNA binding motif, single stranded interacting protein 2a / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2* | ENSDARG00000044179 | 14 | | puf60a / poly-U binding splicing factor a / PUF60* / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60* / Poly(U)-binding-splicing factor PUF60 * | ENSDARG00000032175 | 13 | | Q6IQE0 / puf60b / poly-U binding splicing factor b / PUF60* / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60* / Poly(U)-binding-splicing factor PUF60 * | ENSDARG00000001241 | 13 | | elavl4 / ELAV like neuron-specific RNA binding protein 4 / P26378* / Q61701* / ELAV like RNA binding protein 4* / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA.* | ENSDARG00000045639 | 12 | | elavl2 / ELAV like neuron-specific RNA binding protein 2 / Q12926* / Q60899* / ELAV like RNA binding protein 2* / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA.* | ENSDARG00000040732 | 12 | | elavl1b / ELAV like RNA binding protein 1b / Q15717* / P70372* / ELAVL1* / ELAV-like protein 1 * / ELAV like RNA binding protein 1* | ENSDARG00000101744 | 11 | | elavl1a / ELAV like RNA binding protein 1a / Q15717* / P70372* / ELAVL1* / ELAV-like protein 1 * / ELAV like RNA binding protein 1* | ENSDARG00000038695 | 11 | | elavl3 / ELAV like neuron-specific RNA binding protein 3 / Q60900* / Q14576* / ELAV-like protein 3 * / ELAV like RNA binding protein 3* | ENSDARG00000014420 | 11 | | RBMS1 (1 of many) / RNA binding motif single stranded interacting protein 1 / RBMS1* / P29558* | ENSDARG00000103823 | 9 |
Protein motifs (from Interpro)
| IPR000504 | RNA recognition motif domain | | IPR002004 | Polyadenylate-binding protein/Hyperplastic disc protein | | IPR003954 | RNA recognition motif domain, eukaryote | | IPR006515 | Polyadenylate binding protein, human types 1, 2, 3, 4 |
Gene Ontology (GO)
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000008 | brain | brain quality , abnormal |
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| | ZFA:0000029 | hindbrain | hindbrain quality , abnormal |
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| | ZFA:0000042 | midbrain hindbrain boundary | midbrain hindbrain boundary quality , abnormal
midbrain hindbrain boundary decreased thickness , abnormal |
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| | ZFA:0000084 | yolk | yolk quality , abnormal
yolk circular , abnormal
yolk grey , abnormal |
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| | ZFA:0000106 | extension | extension decreased thickness , abnormal |
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| | ZFA:0000107 | eye | eye decreased size , abnormal |
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| | ZFA:0000110 | fourth ventricle | fourth ventricle distended , abnormal |
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| | ZFA:0000471 | atrium | atrium dilated , abnormal |
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| | ZFA:0001094 | whole organism | whole organism polysome decreased amount , abnormal
whole organism morphology , abnormal
whole organism viability , abnormal
whole organism necrotic , abnormal
whole organism decreased pigmentation , abnormal |
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| | ZFA:0001114 | head | head decreased size , abnormal |
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| | ZFA:0009090 | pigment cell | pigment cell quality , abnormal |
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Interacting proteins (from Reactome)
| ENSDARG00000042252 | eif4h / eukaryotic translation initiation factor 4h / Q15056* / Q9WUK2* | / reaction | | ENSDARG00000005827 | eif2s1a / eukaryotic translation initiation factor 2, subunit 1 alpha a / Q6ZWX6* / P05198* / EIF2S1* / Eukaryotic translation initiation factor 2 subunit 1 * / eukaryotic translation initi... | / reaction | | ENSDARG00000052178 | eif2s1b / eukaryotic translation initiation factor 2, subunit 1 alpha b / Q6ZWX6* / P05198* / EIF2S1* / Eukaryotic translation initiation factor 2 subunit 1 * / eukaryotic translation initi... | / reaction | | ENSDARG00000003032 | eif4a1b / eukaryotic translation initiation factor 4A1B / EIF4A1* / P60842* / P60843* / Eukaryotic initiation factor 4A-I * / eukaryotic translation initiation factor 4A1* | / reaction | | ENSDARG00000092115 | eif4a1a / eukaryotic translation initiation factor 4A1A / EIF4A1* / P60842* / P60843* / Eukaryotic initiation factor 4A-I * / eukaryotic translation initiation factor 4A1* | / reaction | | ENSDARG00000016477 | eif4a2 / eukaryotic translation initiation factor 4A, isoform 2 / P10630* / Q14240* / eukaryotic translation initiation factor 4A2* / Mus musculus eukaryotic translation initiation factor 4... | / reaction | | ENSDARG00000008292 | eif2s3 / F1QGW6 / eukaryotic translation initiation factor 2, subunit 3 gamma / Q9Z0N2* / P41091* / Q2VIR3* / Q9Z0N1* / EIF2S3B* / Eif2s3x* / Eif2s3y* / eukaryotic translation initiation fa... | / reaction | | ENSDARG00000014898 | ncbp2 / Q8JGR6 / nuclear cap binding protein subunit 2 / Q9CQ49* / NCBP2L* / P52298* / A6PVI3* / nuclear cap binding protein subunit 2 like* | / complex | | ENSDARG00000057912 | eif1axb / eukaryotic translation initiation factor 1A, X-linked, b / Eif1a* / Q8BMJ3* / EIF1AX* / EIF1AY* / Gm4027* / Gm5039* / Gm5662* / Gm5788* / Gm6803* / Gm8300* / Gm8332* / O14602* / P... | / reaction | | ENSDARG00000029003 | eif1axa / eukaryotic translation initiation factor 1A, X-linked, a / Eif1a* / Q8BMJ3* / EIF1AX* / EIF1AY* / Gm4027* / Gm5039* / Gm5662* / Gm5788* / Gm6803* / Gm8300* / Gm8332* / O14602* / P... | / reaction |
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