Manteia

ENSDARG00000101744

Danio rerio

Features

Gene ID:	ENSDARG00000101744

Biological name :	elavl1b

Synonyms :	elavl1b / ELAV like RNA binding protein 1b

Possible biological names infered from orthology :	ELAVL1 / ELAV-like protein 1 / ELAV like RNA binding protein 1 / P70372 / Q15717

Species:	Danio rerio

Chr. number:	11
Strand:	-1
Band:
Gene start:	14955484
Gene end:	15001712

Corresponding Affymetrix probe sets:	Dr.4230.1.S1_a_at (Zebrafish Array) NM_130909_at (Zebrafish Genome Array with custom cdf files)

Cross references:	Ensembl peptide - ENSDARP00000149646 Ensembl peptide - ENSDARP00000157323 Ensembl peptide - ENSDARP00000156836 Ensembl peptide - ENSDARP00000156360 Ensembl peptide - ENSDARP00000153928 Ensembl peptide - ENSDARP00000151944 Ensembl peptide - ENSDARP00000130648 Ensembl peptide - ENSDARP00000133909 Ensembl peptide - ENSDARP00000136417 Ensembl peptide - ENSDARP00000137293 Ensembl peptide - ENSDARP00000140063 Ensembl peptide - ENSDARP00000140379 Ensembl peptide - ENSDARP00000140748 Ensembl peptide - ENSDARP00000141802 Ensembl peptide - ENSDARP00000141879 NCBI entrez gene - 30065 See in Manteia. RefSeq - NM_001308618 RefSeq - NM_001308619 RefSeq - NM_130909 RefSeq - NM_001308614 RefSeq - XM_017358196 RefSeq - XM_017358197 RefSeq - NM_001308615 RefSeq - NM_001308616 RefSeq - NM_001308617 RefSeq Peptide - NP_001295546 RefSeq Peptide - NP_001295548 RefSeq Peptide - NP_570984 RefSeq Peptide - NP_001295543 RefSeq Peptide - NP_001295544 RefSeq Peptide - NP_001295545 RefSeq Peptide - NP_001295547 swissprot - A0A0R4IWC9 swissprot - A0A0R4IUM0 swissprot - A0A0R4IU28 swissprot - A0A0R4INX8 swissprot - A0A0R4IJL9 swissprot - Q9PTK4 ZFIN ID - ZDB-GENE-000210-17 Ensembl - ENSDARG00000101744

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
ELAVL1	ENSGALG00000000726	Gallus gallus
ELAVL1	ENSG00000066044	Homo sapiens
Elavl1	ENSMUSG00000040028	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
elavl1a / ELAV like RNA binding protein 1a / Q15717* / P70372* / ELAVL1* / ELAV-like protein 1 * / ELAV like RNA binding protein 1*	ENSDARG00000038695	81
elavl4 / ELAV like neuron-specific RNA binding protein 4 / P26378* / Q61701* / ELAV like RNA binding protein 4* / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA.*	ENSDARG00000045639	66
elavl2 / ELAV like neuron-specific RNA binding protein 2 / Q12926* / Q60899* / ELAV like RNA binding protein 2* / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA.*	ENSDARG00000040732	65
elavl3 / ELAV like neuron-specific RNA binding protein 3 / Q60900* / Q14576* / ELAV-like protein 3 * / ELAV like RNA binding protein 3*	ENSDARG00000014420	64
rbms3 / RNA binding motif, single stranded interacting protein / Q6XE24* / Q8BWL5* / RNA binding motif single stranded interacting protein 3*	ENSDARG00000044574	24
rbms2a / RNA binding motif, single stranded interacting protein 2a / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2*	ENSDARG00000044179	24
rbms2b / RNA binding motif, single stranded interacting protein 2b / RBMS2* / Q8VC70* / Q15434* / RNA binding motif single stranded interacting protein 2*	ENSDARG00000056150	24
rbms1a / RNA binding motif, single stranded interacting protein 1a / RBMS1* / Q91W59* / P29558* / RNA binding motif single stranded interacting protein 1*	ENSDARG00000074023	22
puf60a / poly-U binding splicing factor a / PUF60* / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60* / Poly(U)-binding-splicing factor PUF60 *	ENSDARG00000032175	22
pabpc4 / poly(A) binding protein, cytoplasmic 4 (inducible form) / Q13310* / P0CB38* / PABPC4L* / poly(A) binding protein cytoplasmic 4* / poly(A) binding protein cytoplasmic 4 like*	ENSDARG00000059259	21
pabpc1b / poly A binding protein, cytoplasmic 1 b / PABPC1* / Pabpc2* / PABPC3* / Pabpc6* / Q9H361* / P11940* / P29341* / Polyadenylate-binding protein 1 * / poly(A) binding protein cytopla...	ENSDARG00000021140	20
pabpc1l / poly(A) binding protein, cytoplasmic 1-like / Q4VXU2*	ENSDARG00000002597	19
Q6IQE0 / puf60b / poly-U binding splicing factor b / PUF60* / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60* / Poly(U)-binding-splicing factor PUF60 *	ENSDARG00000001241	19
pabpc1a / poly(A) binding protein, cytoplasmic 1a / PABPC1* / Pabpc2* / PABPC3* / Pabpc6* / Q9H361* / P11940* / P29341* / Polyadenylate-binding protein 1 * / poly(A) binding protein cytopla...	ENSDARG00000017219	19
RBMS1 (1 of many) / RNA binding motif single stranded interacting protein 1 / RBMS1* / P29558*	ENSDARG00000103823	16

Protein motifs (from Interpro)

Interpro ID	Name
IPR000504	RNA recognition motif domain
IPR002343	Paraneoplastic encephalomyelitis antigen
IPR006548	Splicing factor ELAV/Hu
IPR034775	Splicing factor ELAV/Hu, RNA recognition motif 1

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
molecular_function	GO:0003676	nucleic acid binding	IEA
molecular_function	GO:0003723	RNA binding	IEA

Pathways (from Reactome)

Pathway description

HuR (ELAVL1) binds and stabilizes mRNA

mRNA Splicing - Major Pathway

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
ZFA:0000009	cardiac ventricle	cardiac ventricle decreased contractility , abnormal cardiac ventricle dilated , abnormal	Show
ZFA:0000029	hindbrain	hindbrain dilated , abnormal	Show
ZFA:0000054	pericardium	pericardium edematous , abnormal	Show
ZFA:0000109	forebrain	forebrain dilated , abnormal	Show
ZFA:0000114	heart	heart decreased functionality , abnormal	Show
ZFA:0000128	midbrain	midbrain dilated , abnormal	Show
ZFA:0000471	atrium	atrium dilated , abnormal	Show

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr