ENSG00000144642


Homo sapiens

Features
Gene ID: ENSG00000144642
  
Biological name :RBMS3
  
Synonyms : Q6XE24 / RBMS3 / RNA binding motif single stranded interacting protein 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p24.1
Gene start: 28574791
Gene end: 30010391
  
Corresponding Affymetrix probe sets: 1560322_at (Human Genome U133 Plus 2.0 Array)   206767_at (Human Genome U133 Plus 2.0 Array)   235570_at (Human Genome U133 Plus 2.0 Array)   237860_at (Human Genome U133 Plus 2.0 Array)   238447_at (Human Genome U133 Plus 2.0 Array)   241789_at (Human Genome U133 Plus 2.0 Array)   242137_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000395592
Ensembl peptide - ENSP00000391934
Ensembl peptide - ENSP00000397926
Ensembl peptide - ENSP00000490271
Ensembl peptide - ENSP00000489718
Ensembl peptide - ENSP00000400519
Ensembl peptide - ENSP00000273139
Ensembl peptide - ENSP00000373276
Ensembl peptide - ENSP00000373277
NCBI entrez gene - 27303     See in Manteia.
OMIM - 605786
RefSeq - XM_017006182
RefSeq - NM_014483
RefSeq - XM_005265060
RefSeq - XM_005265061
RefSeq - XM_005265062
RefSeq - XM_005265063
RefSeq - XM_005265065
RefSeq - XM_017006178
RefSeq - XM_017006179
RefSeq - XM_017006180
RefSeq - XM_017006181
RefSeq - NM_001003792
RefSeq - NM_001003793
RefSeq - NM_001177711
RefSeq - NM_001177712
RefSeq Peptide - NP_001003793
RefSeq Peptide - NP_001171182
RefSeq Peptide - NP_001171183
RefSeq Peptide - NP_055298
RefSeq Peptide - NP_001003792
swissprot - C9JIJ9
swissprot - C9J9B2
swissprot - A0A1B0GUW5
swissprot - Q6XE24
swissprot - A0A1B0GTI7
Ensembl - ENSG00000144642
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbms3ENSDARG00000044574Danio rerio
 RBMS3ENSGALG00000011439Gallus gallus
 Rbms3ENSMUSG00000039607Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBMS1 / P29558 / RNA binding motif single stranded interacting protein 1ENSG0000015325071
RBMS2 / Q15434 / RNA binding motif single stranded interacting protein 2ENSG0000007606763
PABPC3 / Q9H361 / poly(A) binding protein cytoplasmic 3ENSG0000015184624
P11940 / PABPC1 / poly(A) binding protein cytoplasmic 1ENSG0000007075624
PABPC4 / Q13310 / poly(A) binding protein cytoplasmic 4ENSG0000009062124
ELAVL3 / Q14576 / ELAV like RNA binding protein 3ENSG0000019636122
ELAVL2 / Q12926 / ELAV like RNA binding protein 2ENSG0000010710522
Q4VXU2 / PABPC1L / poly(A) binding protein cytoplasmic 1 likeENSG0000010110422
ELAVL4 / P26378 / ELAV like RNA binding protein 4ENSG0000016237422
ELAVL1 / Q15717 / ELAV like RNA binding protein 1ENSG0000006604420
PUF60 / Q9UHX1 / poly(U) binding splicing factor 60ENSG0000017995019
P0CB38 / PABPC4L / poly(A) binding protein cytoplasmic 4 likeENSG0000025453514
PABPC5 / Q96DU9 / poly(A) binding protein cytoplasmic 5ENSG0000017474013
Q5JQF8 / PABPC1L2A / poly(A) binding protein cytoplasmic 1 like 2AENSG000001862884
Q5JQF8 / PABPC1L2B / poly(A) binding protein cytoplasmic 1 like 2BENSG000001843884


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002343  Paraneoplastic encephalomyelitis antigen
 IPR034406  RBMS3, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002357 defense response to tumor cell IMP
 biological_processGO:0010628 positive regulation of gene expression IMP
 biological_processGO:0010629 negative regulation of gene expression IMP
 biological_processGO:0045727 positive regulation of translation IEA
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IMP
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0008143 poly(A) binding IDA
 molecular_functionGO:0008266 poly(U) RNA binding IDA
 molecular_functionGO:0035925 mRNA 3"-UTR AU-rich region binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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