ENSGALG00000003800


Gallus gallus

Features
Gene ID: ENSGALG00000003800
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : P0CB38 / PABPC4 / PABPC4L / poly(A) binding protein cytoplasmic 4 / poly(A) binding protein cytoplasmic 4 like / Q13310
  
Species: Gallus gallus
  
Chr. number: 23
Strand: -1
Band:
Gene start: 5482619
Gene end: 5494157
  
Corresponding Affymetrix probe sets: Gga.10532.1.S1_at (Chicken Array)   GgaAffx.25984.3.S1_at (Chicken Array)   GgaAffx.25984.4.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000006018
NCBI entrez gene - 419674     See in Manteia.
RefSeq - XM_015297906
swissprot - E1C903
Ensembl - ENSGALG00000003800
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pabpc4ENSDARG00000059259Danio rerio
 P0CB38ENSG00000254535Homo sapiens
 PABPC4ENSG00000090621Homo sapiens
 Pabpc4ENSMUSG00000011257Mus musculus
 Pabpc4lENSMUSG00000090919Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PABPC1 / polyadenylate-binding protein 1 / PABPC3* / Q9H361* / P11940* / P29341* / poly(A) binding protein cytoplasmic 3* / poly(A) binding protein cytoplasmic 1*ENSGALG0000003028080
PABPC1L / poly(A) binding protein cytoplasmic 1 like / Q4VXU2*ENSGALG0000000412371
RBMS1 / RNA binding motif single stranded interacting protein 1 / P29558* / Q91W59*ENSGALG0000001113216
RBMS2 / RNA binding motif single stranded interacting protein 2 / Q15434* / Q8VC70*ENSGALG0000003875716
PUF60 / poly(U)-binding-splicing factor PUF60 / Q3UEB3* / Q9UHX1* / poly(U) binding splicing factor 60*ENSGALG0000003990113
ELAVL2 / ELAV like RNA binding protein 2 / Q12926* / Q60899* / Mus musculus ELAV like RNA binding protein 1 (Elavl2), transcript variant 5, mRNA.*ENSGALG0000001579912
ELAVL4 / ELAV-like protein 4 / P26378* / Q61701* / ELAV like RNA binding protein 4* / Mus musculus ELAV like RNA binding protein 4 (Elavl4), transcript variant 5, mRNA.*ENSGALG0000001053312
ELAVL1 / ELAV-like protein 1 / P70372* / Q15717* / ELAV like RNA binding protein 1*ENSGALG0000000072612
RBMS3 / RNA binding motif single stranded interacting protein 3 / Q6XE24* / Q8BWL5* / RNA binding motif, single stranded interacting protein*ENSGALG0000001143911
ENSGALG000000382597


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002004  Polyadenylate-binding protein/Hyperplastic disc protein
 IPR003954  RNA recognition motif domain, eukaryote
 IPR006515  Polyadenylate binding protein, human types 1, 2, 3, 4
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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