ENSDARG00000017211


Danio rerio

Features
Gene ID: ENSDARG00000017211
  
Biological name :plxnb1b
  
Synonyms : plexin b1b / plxnb1b
  
Possible biological names infered from orthology : O43157 / plexin B1 / PLXNB1 / Q8CJH3
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 21874932
Gene end: 21988375
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000042247
Ensembl peptide - ENSDARP00000131217
NCBI entrez gene - 570222     See in Manteia.
swissprot - F1Q7U0
ZFIN ID - ZDB-GENE-090812-4
Ensembl - ENSDARG00000017211
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PLXNB1ENSGALG00000006526Gallus gallus
 O43157ENSG00000164050Homo sapiens
 Plxnb1ENSMUSG00000053646Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
plxnb1a / plexin b1a / PLXNB1* / O43157* / Q8CJH3* / plexin B1*ENSDARG0000007582153
plxnb3 / plexin B3 / Q9QY40* / Q9ULL4*ENSDARG0000003299045
plxnb2b / plexin b2b / O15031* / PLXNB2* / plexin B2*ENSDARG0000003698535
plxnb2a / plexin b2a / O15031* / B2RXS4* / PLXNB2* / plexin B2*ENSDARG0000000381134
plxna4 / plexin A4 / Q80UG2* / Q9HCM2*ENSDARG0000001932830
plxna2 / plexin A2 / O75051* / P70207*ENSDARG0000006037229
plxna3 / plexin A3 / P51805* / P70208*ENSDARG0000000717229
plxna1a / plexin A1a / PLXNA1* / Q9UIW2* / plexin A1*ENSDARG0000010545229
LO018148.1 / PLXNA1* / Q9UIW2* / plexin A1*ENSDARG0000011482327
plxnc1 / plexin C1 / O60486* / Q9QZC2*ENSDARG0000001527814
si:dkey-183c2.4 / B2RXS4* / O15031* / PLXNB2* / plexin B2*ENSDARG000000798928
plxnb2a / plexin b2a / O15031* / B2RXS4* / PLXNB2* / plexin B2*ENSDARG000000947998
si:ch211-127b11.1 / B2RXS4* / O15031* / PLXNB2* / plexin B2*ENSDARG000000770906
plxnd1 / plexin D1 / Q3UH93* / Q9Y4D7*ENSDARG000000860575


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR002165  Plexin repeat
 IPR002909  IPT domain
 IPR008936  Rho GTPase activation protein
 IPR013548  Plexin, cytoplasmic RasGAP domain
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR031148  Plexin family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007162 negative regulation of cell adhesion IBA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0008360 regulation of cell shape IBA
 biological_processGO:0043087 regulation of GTPase activity IBA
 biological_processGO:0048675 axon extension IMP
 biological_processGO:0050772 positive regulation of axonogenesis IBA
 biological_processGO:0071526 semaphorin-plexin signaling pathway IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0017154 semaphorin receptor activity IEA


Pathways (from Reactome)
Pathway description
G alpha (12/13) signalling events
Sema4D mediated inhibition of cell attachment and migration
Sema4D induced cell migration and growth-cone collapse


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001056 myotome myotome CaP motoneuron hypoplastic , abnormal
Show

 ZFA:0009243 CaP motoneuron CaP motoneuron axon decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr