ENSDARG00000017780


Danio rerio

Features
Gene ID: ENSDARG00000017780
  
Biological name :rorcb
  
Synonyms : RAR-related orphan receptor C b / rorcb
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 49417900
Gene end: 49454451
  
Corresponding Affymetrix probe sets: Dr.12904.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000105771
Ensembl peptide - ENSDARP00000130739
NCBI entrez gene - 562258     See in Manteia.
RefSeq - NM_001277094
RefSeq Peptide - NP_001264023
swissprot - B8JJ08
swissprot - A0A0R4IBY5
ZFIN ID - ZDB-GENE-040724-215
Ensembl - ENSDARG00000017780
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000001035Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rorca / RAR-related orphan receptor C aENSDARG0000005723176
rorb / RAR-related orphan receptor B / Q8R1B8* / Q92753* / Nuclear receptor ROR-beta *ENSDARG0000003349857
rorab / RAR-related orphan receptor A, paralog bENSDARG0000000191051
roraa / RAR-related orphan receptor A, paralog a / RORA* / P51448* / P35398* / RAR related orphan receptor A* / RAR-related orphan receptor alpha*ENSDARG0000003176850
nr1d2b / nuclear receptor subfamily 1, group D, member 2b / NR1D2* / Q60674* / Q14995* / nuclear receptor subfamily 1 group D member 2*ENSDARG0000000959428
nr1d4a / nuclear receptor subfamily 1, group D, member 4aENSDARG0000003116128
nr1d2a / nuclear receptor subfamily 1, group D, member 2aENSDARG0000000382027
nr1d4b / nuclear receptor subfamily 1, group D, member 4bENSDARG0000005937027
nr1d1 / nuclear receptor subfamily 1, group d, member 1 / P20393* / Q3UV55*ENSDARG0000003316026
rorc / RAR-related orphan receptor C / P51449* / P51450* / Nuclear receptor ROR-gamma *ENSDARG0000008719521
pparab / peroxisome proliferator-activated receptor alpha b / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*ENSDARG0000005432321
pparda / peroxisome proliferator-activated receptor delta a / PPARD* / P35396* / Q03181* / peroxisome proliferator activated receptor delta*ENSDARG0000004452521
nr5a2 / nuclear receptor subfamily 5, group A, member 2 / O00482*ENSDARG0000010094021
ppardb / peroxisome proliferator-activated receptor delta b / PPARD* / P35396* / Q03181* / peroxisome proliferator activated receptor delta*ENSDARG0000000947321
pparaa / peroxisome proliferator-activated receptor alpha a / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*ENSDARG0000003177721
nr5a1a / nuclear receptor subfamily 5, group A, member 1a / NR5A1* / P33242* / Q13285* / Steroidogenic factor 1 * / nuclear receptor subfamily 5 group A member 1*ENSDARG0000010317620
nr5a1b / nuclear receptor subfamily 5, group A, member 1b / NR5A1* / P33242* / Q13285* / Steroidogenic factor 1 * / nuclear receptor subfamily 5 group A member 1*ENSDARG0000002336220
nr5a5 / nuclear receptor subfamily 5, group A, member 5ENSDARG0000003911619
nr6a1a / nuclear receptor subfamily 6, group A, member 1a / NR6A1* / Q64249* / Q15406* / nuclear receptor subfamily 6 group A member 1*ENSDARG0000010150818
nr6a1b / nuclear receptor subfamily 6, group A, member 1bENSDARG0000001448017


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003079  Nuclear receptor ROR
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0004879 nuclear receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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