ENSDARG00000009594


Danio rerio

Features
Gene ID: ENSDARG00000009594
  
Biological name :nr1d2b
  
Synonyms : nr1d2b / nuclear receptor subfamily 1, group D, member 2b
  
Possible biological names infered from orthology : NR1D2 / nuclear receptor subfamily 1 group D member 2 / Q14995 / Q60674
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 17400263
Gene end: 17407115
  
Corresponding Affymetrix probe sets: Dr.15260.1.S1_at (Zebrafish Array)   Dr.15260.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000112360
Ensembl peptide - ENSDARP00000126313
NCBI entrez gene - 30271     See in Manteia.
RefSeq - NM_131065
RefSeq Peptide - NP_571140
swissprot - I3ITP2
swissprot - Q6GMI3
ZFIN ID - ZDB-GENE-990415-244
Ensembl - ENSDARG00000009594
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NR1D2ENSGALG00000011291Gallus gallus
 NR1D2ENSG00000174738Homo sapiens
 Nr1d2ENSMUSG00000021775Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nr1d2a / nuclear receptor subfamily 1, group D, member 2aENSDARG0000000382051
nr1d1 / nuclear receptor subfamily 1, group d, member 1 / P20393* / Q3UV55*ENSDARG0000003316050
nr1d4a / nuclear receptor subfamily 1, group D, member 4aENSDARG0000003116143
nr1d4b / nuclear receptor subfamily 1, group D, member 4bENSDARG0000005937041
roraa / RAR-related orphan receptor A, paralog a / RORA* / P51448* / P35398* / RAR related orphan receptor A* / RAR-related orphan receptor alpha*ENSDARG0000003176824
rorab / RAR-related orphan receptor A, paralog bENSDARG0000000191024
pparaa / peroxisome proliferator-activated receptor alpha a / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*ENSDARG0000003177724
rorb / RAR-related orphan receptor B / Q8R1B8* / Q92753* / Nuclear receptor ROR-beta *ENSDARG0000003349824
rorcb / RAR-related orphan receptor C bENSDARG0000001778023
rorca / RAR-related orphan receptor C aENSDARG0000005723123
pparab / peroxisome proliferator-activated receptor alpha b / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*ENSDARG0000005432322
pparda / peroxisome proliferator-activated receptor delta a / PPARD* / P35396* / Q03181* / peroxisome proliferator activated receptor delta*ENSDARG0000004452521
ppardb / peroxisome proliferator-activated receptor delta b / PPARD* / P35396* / Q03181* / peroxisome proliferator activated receptor delta*ENSDARG0000000947321
nr5a5 / nuclear receptor subfamily 5, group A, member 5ENSDARG0000003911619
nr5a2 / nuclear receptor subfamily 5, group A, member 2 / O00482*ENSDARG0000010094019
nr6a1a / nuclear receptor subfamily 6, group A, member 1a / NR6A1* / Q64249* / Q15406* / nuclear receptor subfamily 6 group A member 1*ENSDARG0000010150819
nr5a1a / nuclear receptor subfamily 5, group A, member 1a / NR5A1* / P33242* / Q13285* / Steroidogenic factor 1 * / nuclear receptor subfamily 5 group A member 1*ENSDARG0000010317618
nr5a1b / nuclear receptor subfamily 5, group A, member 1b / NR5A1* / P33242* / Q13285* / Steroidogenic factor 1 * / nuclear receptor subfamily 5 group A member 1*ENSDARG0000002336218
nr6a1b / nuclear receptor subfamily 6, group A, member 1bENSDARG0000001448017
rorc / RAR-related orphan receptor C / P51449* / P51450* / Nuclear receptor ROR-gamma *ENSDARG0000008719511


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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