ENSDARG00000031768


Danio rerio

Features
Gene ID: ENSDARG00000031768
  
Biological name :roraa
  
Synonyms : RAR-related orphan receptor A, paralog a / roraa
  
Possible biological names infered from orthology : P35398 / P51448 / RAR related orphan receptor A / RAR-related orphan receptor alpha / RORA
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 33849647
Gene end: 33969717
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000124850
Ensembl peptide - ENSDARP00000106236
NCBI entrez gene - 564951     See in Manteia.
RefSeq - XM_017354088
RefSeq - NM_001110167
RefSeq Peptide - NP_001103637
swissprot - F8W254
swissprot - F1QLY4
ZFIN ID - ZDB-GENE-060306-2
Ensembl - ENSDARG00000031768
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RORAENSGALG00000003759Gallus gallus
 RORAENSG00000069667Homo sapiens
 RoraENSMUSG00000032238Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rorab / RAR-related orphan receptor A, paralog bENSDARG0000000191074
rorb / RAR-related orphan receptor B / Q8R1B8* / Q92753* / Nuclear receptor ROR-beta *ENSDARG0000003349864
rorcb / RAR-related orphan receptor C bENSDARG0000001778051
rorca / RAR-related orphan receptor C aENSDARG0000005723151
nr1d4b / nuclear receptor subfamily 1, group D, member 4bENSDARG0000005937029
nr1d2b / nuclear receptor subfamily 1, group D, member 2b / NR1D2* / Q60674* / Q14995* / nuclear receptor subfamily 1 group D member 2*ENSDARG0000000959429
nr1d1 / nuclear receptor subfamily 1, group d, member 1 / P20393* / Q3UV55*ENSDARG0000003316028
nr1d4a / nuclear receptor subfamily 1, group D, member 4aENSDARG0000003116128
nr1d2a / nuclear receptor subfamily 1, group D, member 2aENSDARG0000000382028
ppardb / peroxisome proliferator-activated receptor delta b / PPARD* / P35396* / Q03181* / peroxisome proliferator activated receptor delta*ENSDARG0000000947323
pparab / peroxisome proliferator-activated receptor alpha b / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*ENSDARG0000005432322
pparaa / peroxisome proliferator-activated receptor alpha a / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*ENSDARG0000003177722
nr5a2 / nuclear receptor subfamily 5, group A, member 2 / O00482*ENSDARG0000010094022
pparda / peroxisome proliferator-activated receptor delta a / PPARD* / P35396* / Q03181* / peroxisome proliferator activated receptor delta*ENSDARG0000004452522
rorc / RAR-related orphan receptor C / P51449* / P51450* / Nuclear receptor ROR-gamma *ENSDARG0000008719522
nr5a1b / nuclear receptor subfamily 5, group A, member 1b / NR5A1* / P33242* / Q13285* / Steroidogenic factor 1 * / nuclear receptor subfamily 5 group A member 1*ENSDARG0000002336220
nr5a5 / nuclear receptor subfamily 5, group A, member 5ENSDARG0000003911619
nr5a1a / nuclear receptor subfamily 5, group A, member 1a / NR5A1* / P33242* / Q13285* / Steroidogenic factor 1 * / nuclear receptor subfamily 5 group A member 1*ENSDARG0000010317619
nr6a1a / nuclear receptor subfamily 6, group A, member 1a / NR6A1* / Q64249* / Q15406* / nuclear receptor subfamily 6 group A member 1*ENSDARG0000010150818
nr6a1b / nuclear receptor subfamily 6, group A, member 1bENSDARG0000001448016


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003079  Nuclear receptor ROR
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0010468 regulation of gene expression IGI
 biological_processGO:0010628 positive regulation of gene expression IDA
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0004879 nuclear receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway
SUMOylation of intracellular receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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