ENSDARG00000087195


Danio rerio

Features
Gene ID: ENSDARG00000087195
  
Biological name :rorc
  
Synonyms : RAR-related orphan receptor C / rorc
  
Possible biological names infered from orthology : Nuclear receptor ROR-gamma / P51449 / P51450
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 17913936
Gene end: 18088024
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000138028
Ensembl peptide - ENSDARP00000124002
NCBI entrez gene - 100004847     See in Manteia.
RefSeq - XM_001344013
swissprot - F8W3X2
swissprot - A0A0R4ISA0
ZFIN ID - ZDB-GENE-110411-42
Ensembl - ENSDARG00000087195
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RORCENSGALG00000033941Gallus gallus
 RORCENSG00000143365Homo sapiens
 RorcENSMUSG00000028150Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rorb / RAR-related orphan receptor B / Q8R1B8* / Q92753* / Nuclear receptor ROR-beta *ENSDARG0000003349844
rorab / RAR-related orphan receptor A, paralog bENSDARG0000000191042
rorca / RAR-related orphan receptor C aENSDARG0000005723141
roraa / RAR-related orphan receptor A, paralog a / RORA* / P51448* / P35398* / RAR related orphan receptor A* / RAR-related orphan receptor alpha*ENSDARG0000003176841
rorcb / RAR-related orphan receptor C bENSDARG0000001778040
nr1d2b / nuclear receptor subfamily 1, group D, member 2b / NR1D2* / Q60674* / Q14995* / nuclear receptor subfamily 1 group D member 2*ENSDARG0000000959426
nr1d4a / nuclear receptor subfamily 1, group D, member 4aENSDARG0000003116125
nr1d1 / nuclear receptor subfamily 1, group d, member 1 / P20393* / Q3UV55*ENSDARG0000003316024
nr1d4b / nuclear receptor subfamily 1, group D, member 4bENSDARG0000005937024
nr1d2a / nuclear receptor subfamily 1, group D, member 2aENSDARG0000000382023
nr6a1a / nuclear receptor subfamily 6, group A, member 1a / NR6A1* / Q64249* / Q15406* / nuclear receptor subfamily 6 group A member 1*ENSDARG0000010150822
ppardb / peroxisome proliferator-activated receptor delta b / PPARD* / P35396* / Q03181* / peroxisome proliferator activated receptor delta*ENSDARG0000000947322
pparab / peroxisome proliferator-activated receptor alpha b / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*ENSDARG0000005432322
nr5a5 / nuclear receptor subfamily 5, group A, member 5ENSDARG0000003911622
pparda / peroxisome proliferator-activated receptor delta a / PPARD* / P35396* / Q03181* / peroxisome proliferator activated receptor delta*ENSDARG0000004452521
nr5a2 / nuclear receptor subfamily 5, group A, member 2 / O00482*ENSDARG0000010094021
nr6a1b / nuclear receptor subfamily 6, group A, member 1bENSDARG0000001448020
pparaa / peroxisome proliferator-activated receptor alpha a / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*ENSDARG0000003177720
nr5a1b / nuclear receptor subfamily 5, group A, member 1b / NR5A1* / P33242* / Q13285* / Steroidogenic factor 1 * / nuclear receptor subfamily 5 group A member 1*ENSDARG0000002336220
nr5a1a / nuclear receptor subfamily 5, group A, member 1a / NR5A1* / P33242* / Q13285* / Steroidogenic factor 1 * / nuclear receptor subfamily 5 group A member 1*ENSDARG0000010317618


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003079  Nuclear receptor ROR
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0004879 nuclear receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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