ENSDARG00000009473


Danio rerio

Features
Gene ID: ENSDARG00000009473
  
Biological name :ppardb
  
Synonyms : peroxisome proliferator-activated receptor delta b / ppardb
  
Possible biological names infered from orthology : P35396 / peroxisome proliferator activated receptor delta / PPARD / Q03181
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 23703464
Gene end: 23726040
  
Corresponding Affymetrix probe sets: Dr.5291.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113708
Ensembl peptide - ENSDARP00000145280
Ensembl peptide - ENSDARP00000120571
Ensembl peptide - ENSDARP00000115428
Ensembl peptide - ENSDARP00000110137
NCBI entrez gene - 30754     See in Manteia.
swissprot - A9C4A5
swissprot - A9C4A4
swissprot - A9C4A3
ZFIN ID - ZDB-GENE-000112-47
Ensembl - ENSDARG00000009473
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PPARDENSGALG00000002588Gallus gallus
 PPARDENSG00000112033Homo sapiens
 PpardENSMUSG00000002250Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pparda / peroxisome proliferator-activated receptor delta a / PPARD* / P35396* / Q03181* / peroxisome proliferator activated receptor delta*ENSDARG0000004452569
pparab / peroxisome proliferator-activated receptor alpha b / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*ENSDARG0000005432352
pparaa / peroxisome proliferator-activated receptor alpha a / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*ENSDARG0000003177749
nr1d4b / nuclear receptor subfamily 1, group D, member 4bENSDARG0000005937024
nr1d4a / nuclear receptor subfamily 1, group D, member 4aENSDARG0000003116124
nr1d1 / nuclear receptor subfamily 1, group d, member 1 / P20393* / Q3UV55*ENSDARG0000003316024
nr1d2b / nuclear receptor subfamily 1, group D, member 2b / NR1D2* / Q60674* / Q14995* / nuclear receptor subfamily 1 group D member 2*ENSDARG0000000959423
nr1d2a / nuclear receptor subfamily 1, group D, member 2aENSDARG0000000382022
roraa / RAR-related orphan receptor A, paralog a / RORA* / P51448* / P35398* / RAR related orphan receptor A* / RAR-related orphan receptor alpha*ENSDARG0000003176821
rorab / RAR-related orphan receptor A, paralog bENSDARG0000000191021
rorb / RAR-related orphan receptor B / Q8R1B8* / Q92753* / Nuclear receptor ROR-beta *ENSDARG0000003349820
rorca / RAR-related orphan receptor C aENSDARG0000005723119
rorcb / RAR-related orphan receptor C bENSDARG0000001778019
nr5a5 / nuclear receptor subfamily 5, group A, member 5ENSDARG0000003911616
nr5a1b / nuclear receptor subfamily 5, group A, member 1b / NR5A1* / P33242* / Q13285* / Steroidogenic factor 1 * / nuclear receptor subfamily 5 group A member 1*ENSDARG0000002336216
nr6a1a / nuclear receptor subfamily 6, group A, member 1a / NR6A1* / Q64249* / Q15406* / nuclear receptor subfamily 6 group A member 1*ENSDARG0000010150816
nr5a2 / nuclear receptor subfamily 5, group A, member 2 / O00482*ENSDARG0000010094016
nr5a1a / nuclear receptor subfamily 5, group A, member 1a / NR5A1* / P33242* / Q13285* / Steroidogenic factor 1 * / nuclear receptor subfamily 5 group A member 1*ENSDARG0000010317615
nr6a1b / nuclear receptor subfamily 6, group A, member 1bENSDARG0000001448015
rorc / RAR-related orphan receptor C / P51449* / P51450* / Nuclear receptor ROR-gamma *ENSDARG0000008719511


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003074  Peroxisome proliferator-activated receptor
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0004879 nuclear receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Import of palmitoyl-CoA into the mitochondrial matrix
Regulation of pyruvate dehydrogenase (PDH) complex
Nuclear Receptor transcription pathway
Signaling by Retinoic Acid


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000002311 fabp11b / fatty acid binding protein 11b / PMP2* / FABP4* / FABP5* / FABP9* / A6NFH5* / FABP12* / P02689* / P04117* / P15090* / P24526* / Q01469* / Q05816* / Q0Z7S8* / Q9DAK4* / O08716* / G...  / reaction / complex
 ENSDARG00000057737 rxraa / retinoid X receptor, alpha a / RXRA* / P19793* / P28700* / retinoid X receptor alpha*  / complex
 ENSDARG00000017299 fabp11a / fatty acid binding protein 11a / PMP2* / FABP4* / FABP5* / FABP9* / A6NFH5* / FABP12* / P02689* / P04117* / P15090* / P24526* / Q01469* / Q05816* / Q0Z7S8* / Q9DAK4* / O08716* / G...  / reaction / complex






 

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