ENSDARG00000033498


Danio rerio

Features
Gene ID: ENSDARG00000033498
  
Biological name :rorb
  
Synonyms : RAR-related orphan receptor B / rorb
  
Possible biological names infered from orthology : Nuclear receptor ROR-beta / Q8R1B8 / Q92753
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 25366677
Gene end: 25406807
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000084181
swissprot - F1R6M2
ZFIN ID - ZDB-GENE-061204-2
Ensembl - ENSDARG00000033498
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RORBENSGALG00000015150Gallus gallus
 RORBENSG00000198963Homo sapiens
 RorbENSMUSG00000036192Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
roraa / RAR-related orphan receptor A, paralog a / RORA* / P51448* / P35398* / RAR related orphan receptor A* / RAR-related orphan receptor alpha*ENSDARG0000003176865
rorca / RAR-related orphan receptor C aENSDARG0000005723159
rorab / RAR-related orphan receptor A, paralog bENSDARG0000000191058
rorcb / RAR-related orphan receptor C bENSDARG0000001778058
nr1d2b / nuclear receptor subfamily 1, group D, member 2b / NR1D2* / Q60674* / Q14995* / nuclear receptor subfamily 1 group D member 2*ENSDARG0000000959429
nr1d1 / nuclear receptor subfamily 1, group d, member 1 / P20393* / Q3UV55*ENSDARG0000003316028
nr1d4a / nuclear receptor subfamily 1, group D, member 4aENSDARG0000003116128
nr1d4b / nuclear receptor subfamily 1, group D, member 4bENSDARG0000005937027
nr1d2a / nuclear receptor subfamily 1, group D, member 2aENSDARG0000000382027
rorc / RAR-related orphan receptor C / P51449* / P51450* / Nuclear receptor ROR-gamma *ENSDARG0000008719524
ppardb / peroxisome proliferator-activated receptor delta b / PPARD* / P35396* / Q03181* / peroxisome proliferator activated receptor delta*ENSDARG0000000947323
pparab / peroxisome proliferator-activated receptor alpha b / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*ENSDARG0000005432322
pparda / peroxisome proliferator-activated receptor delta a / PPARD* / P35396* / Q03181* / peroxisome proliferator activated receptor delta*ENSDARG0000004452522
pparaa / peroxisome proliferator-activated receptor alpha a / PPARA* / P23204* / Q07869* / peroxisome proliferator activated receptor alpha*ENSDARG0000003177722
nr5a2 / nuclear receptor subfamily 5, group A, member 2 / O00482*ENSDARG0000010094021
nr5a1a / nuclear receptor subfamily 5, group A, member 1a / NR5A1* / P33242* / Q13285* / Steroidogenic factor 1 * / nuclear receptor subfamily 5 group A member 1*ENSDARG0000010317621
nr5a5 / nuclear receptor subfamily 5, group A, member 5ENSDARG0000003911620
nr5a1b / nuclear receptor subfamily 5, group A, member 1b / NR5A1* / P33242* / Q13285* / Steroidogenic factor 1 * / nuclear receptor subfamily 5 group A member 1*ENSDARG0000002336220
nr6a1a / nuclear receptor subfamily 6, group A, member 1a / NR6A1* / Q64249* / Q15406* / nuclear receptor subfamily 6 group A member 1*ENSDARG0000010150817
nr6a1b / nuclear receptor subfamily 6, group A, member 1bENSDARG0000001448016


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003079  Nuclear receptor ROR
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0004879 nuclear receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr