ENSDARG00000031463


Danio rerio

Features
Gene ID: ENSDARG00000031463
  
Biological name :syt6b
  
Synonyms : synaptotagmin VIb / syt6b
  
Possible biological names infered from orthology : Q5T7P8 / Q9R0N8 / synaptotagmin 6 / synaptotagmin VI / SYT6
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 24620742
Gene end: 24664031
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000154717
Ensembl peptide - ENSDARP00000048364
Ensembl peptide - ENSDARP00000147704
Ensembl peptide - ENSDARP00000150819
NCBI entrez gene - 562928     See in Manteia.
RefSeq - XM_021472491
RefSeq - XM_021479993
swissprot - F1QD38
ZFIN ID - ZDB-GENE-090601-3
Ensembl - ENSDARG00000031463
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SYT6ENSGALG00000001968Gallus gallus
 SYT6ENSG00000134207Homo sapiens
 Syt6ENSMUSG00000027849Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
syt6a / synaptotagmin VIa / SYT6* / Q9R0N8* / Q5T7P8* / synaptotagmin 6* / synaptotagmin VI*ENSDARG0000007673078
syt10 / synaptotagmin X / Q6XYQ8* / Q9R0N4* / synaptotagmin 10*ENSDARG0000004575066
syt9a / synaptotagmin IXa / SYT9* / Q86SS6* / synaptotagmin 9*ENSDARG0000000399457
syt9b / synaptotagmin IXb / SYT9* / Q86SS6* / Q9R0N9* / synaptotagmin 9*ENSDARG0000002923955
syt3 / synaptotagmin III / Q9BQG1* / synaptotagmin 3*ENSDARG0000007583051
syt1a / synaptotagmin Ia / SYT1* / P46096* / P21579* / synaptotagmin 1* / synaptotagmin I*ENSDARG0000003061434
syt2a / synaptotagmin IIa / SYT2* / Q8N9I0* / synaptotagmin 2* / synaptotagmin II*ENSDARG0000002520633
syt5b / synaptotagmin Vb / SYT5* / O00445* / Q9R0N5* / synaptotagmin 5*ENSDARG0000001164032
syt7a / synaptotagmin VIIa / SYT7* / O43581* / Q9R0N7* / synaptotagmin 7*ENSDARG0000006356831
syt1b / synaptotagmin Ib / SYT1* / P46096* / P21579* / synaptotagmin 1* / synaptotagmin I*ENSDARG0000004235030
syt5a / synaptotagmin Va / SYT5* / O00445* / Q9R0N5* / synaptotagmin 5*ENSDARG0000003794130
syt7b / synaptotagmin VIIb / SYT7* / O43581* / Q9R0N7* / synaptotagmin 7*ENSDARG0000007806029
syt11a / synaptotagmin XIa / SYT11* / Q9BT88* / Q9R0N3* / synaptotagmin 11*ENSDARG0000005791328
syt11b / synaptotagmin XIb / SYT11* / Q9BT88* / Q9R0N3* / synaptotagmin 11*ENSDARG0000005610527
syt4 / synaptotagmin IV / P40749* / Q9H2B2* / synaptotagmin 4*ENSDARG0000003650527
SYT2 / synaptotagmin 2 / Q8N9I0*ENSDARG0000001416916


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR001565  Synaptotagmin
 IPR028701  Synaptotagmin-6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0007340 acrosome reaction IEA
 biological_processGO:0017158 regulation of calcium ion-dependent exocytosis IBA
 biological_processGO:0048791 calcium ion-regulated exocytosis of neurotransmitter IBA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0005509 calcium ion binding IBA
 molecular_functionGO:0005544 calcium-dependent phospholipid binding IBA
 molecular_functionGO:0019905 syntaxin binding IBA
 molecular_functionGO:0030276 clathrin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr