ENSDARG00000056105


Danio rerio

Features
Gene ID: ENSDARG00000056105
  
Biological name :syt11b
  
Synonyms : synaptotagmin XIb / syt11b
  
Possible biological names infered from orthology : Q9BT88 / Q9R0N3 / synaptotagmin 11 / SYT11
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 28842414
Gene end: 28856112
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000073004
NCBI entrez gene - 794707     See in Manteia.
RefSeq - NM_001162531
RefSeq Peptide - NP_001156003
swissprot - F1QQZ8
ZFIN ID - ZDB-GENE-090601-7
Ensembl - ENSDARG00000056105
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SYT11ENSGALG00000014646Gallus gallus
 SYT11ENSG00000132718Homo sapiens
 Syt11ENSMUSG00000068923Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
syt11a / synaptotagmin XIa / SYT11* / Q9BT88* / Q9R0N3* / synaptotagmin 11*ENSDARG0000005791369
syt4 / synaptotagmin IV / P40749* / Q9H2B2* / synaptotagmin 4*ENSDARG0000003650543
syt1a / synaptotagmin Ia / SYT1* / P46096* / P21579* / synaptotagmin 1* / synaptotagmin I*ENSDARG0000003061429
syt10 / synaptotagmin X / Q6XYQ8* / Q9R0N4* / synaptotagmin 10*ENSDARG0000004575028
syt7a / synaptotagmin VIIa / SYT7* / O43581* / Q9R0N7* / synaptotagmin 7*ENSDARG0000006356828
syt7b / synaptotagmin VIIb / SYT7* / O43581* / Q9R0N7* / synaptotagmin 7*ENSDARG0000007806027
syt6a / synaptotagmin VIa / SYT6* / Q9R0N8* / Q5T7P8* / synaptotagmin 6* / synaptotagmin VI*ENSDARG0000007673027
syt5a / synaptotagmin Va / SYT5* / O00445* / Q9R0N5* / synaptotagmin 5*ENSDARG0000003794126
syt3 / synaptotagmin III / Q9BQG1* / synaptotagmin 3*ENSDARG0000007583026
syt6b / synaptotagmin VIb / SYT6* / Q9R0N8* / Q5T7P8* / synaptotagmin 6* / synaptotagmin VI*ENSDARG0000003146326
syt5b / synaptotagmin Vb / SYT5* / O00445* / Q9R0N5* / synaptotagmin 5*ENSDARG0000001164026
syt9b / synaptotagmin IXb / SYT9* / Q86SS6* / Q9R0N9* / synaptotagmin 9*ENSDARG0000002923926
syt9a / synaptotagmin IXa / SYT9* / Q86SS6* / synaptotagmin 9*ENSDARG0000000399426
syt2a / synaptotagmin IIa / SYT2* / Q8N9I0* / synaptotagmin 2* / synaptotagmin II*ENSDARG0000002520625
syt1b / synaptotagmin Ib / SYT1* / P46096* / P21579* / synaptotagmin 1* / synaptotagmin I*ENSDARG0000004235025
SYT2 / synaptotagmin 2 / Q8N9I0*ENSDARG0000001416913


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR001565  Synaptotagmin
 IPR028699  Synaptotagmin-11


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0048791 calcium ion-regulated exocytosis of neurotransmitter IBA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0019905 syntaxin binding IBA
 molecular_functionGO:0030276 clathrin binding IBA


Pathways (from Reactome)
Pathway description
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000057913 syt11a / synaptotagmin XIa / SYT11* / Q9BT88* / Q9R0N3* / synaptotagmin 11*  / complex
 ENSDARG00000056105 syt11b / synaptotagmin XIb / SYT11* / Q9BT88* / Q9R0N3* / synaptotagmin 11*  / complex






 

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