ENSDARG00000042231


Danio rerio

Features
Gene ID: ENSDARG00000042231
  
Biological name :stx11b.2
  
Synonyms : stx11b.2 / syntaxin 11b, tandem duplicate 2
  
Possible biological names infered from orthology : O75558 / STX11 / syntaxin 11
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 26535342
Gene end: 26537171
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000150124
Ensembl peptide - ENSDARP00000061925
NCBI entrez gene - 100005065     See in Manteia.
RefSeq - NM_001105602
RefSeq Peptide - NP_001099072
swissprot - A5PMK2
ZFIN ID - ZDB-GENE-050417-148
Ensembl - ENSDARG00000042231
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000011673Gallus gallus
 STX11ENSG00000135604Homo sapiens
 Stx11ENSMUSG00000039232Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
stx11b.1 / syntaxin 11b, tandem duplicate 1 / STX11* / O75558* / syntaxin 11*ENSDARG0000002929061
stx11a / syntaxin 11a / STX11* / O75558* / syntaxin 11*ENSDARG0000004403940
stx1b / syntaxin 1B / P61264* / P61266*ENSDARG0000000050328
stx3a / syntaxin 3A / STX3* / Q64704* / Q13277* / syntaxin 3*ENSDARG0000000188028
stx4 / syntaxin 4 / Stx4a* / P70452* / Q12846*ENSDARG0000005251827
stx2b / syntaxin 2b / STX2* / P32856* / syntaxin 2*ENSDARG0000006821727
STX3 / zgc:165520 / Q13277* / Q64704* / syntaxin 3*ENSDARG0000005198126
stx1a / syntaxin 1A (brain) / O35526* / Q16623* / syntaxin 1A*ENSDARG0000005899425
stx2a / syntaxin 2a / STX2* / P32856* / syntaxin 2*ENSDARG0000000461817


Protein motifs (from Interpro)
Interpro ID Name
 IPR000727  Target SNARE coiled-coil homology domain
 IPR006011  Syntaxin, N-terminal domain
 IPR010989  SNARE


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0031629 synaptic vesicle fusion to presynaptic active zone membrane IBA
 biological_processGO:0048278 vesicle docking IBA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0008021 synaptic vesicle IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IBA
 cellular_componentGO:0031201 SNARE complex IBA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr