ENSDARG00000004618


Danio rerio

Features
Gene ID: ENSDARG00000004618
  
Biological name :stx2a
  
Synonyms : stx2a / syntaxin 2a
  
Possible biological names infered from orthology : P32856 / STX2 / syntaxin 2
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 17951286
Gene end: 17956739
  
Corresponding Affymetrix probe sets: Dr.11975.1.A1_at (Zebrafish Array)   NM_001003561_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000005867
Ensembl peptide - ENSDARP00000123358
NCBI entrez gene - 445167     See in Manteia.
RefSeq - NM_001003561
RefSeq Peptide - NP_001003561
swissprot - F1R9K0
swissprot - E9QCC0
ZFIN ID - ZDB-GENE-040801-80
Ensembl - ENSDARG00000004618
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 STX2ENSGALG00000002536Gallus gallus
 STX2ENSG00000111450Homo sapiens
 Stx2ENSMUSG00000029428Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
stx2b / syntaxin 2b / STX2* / P32856* / syntaxin 2*ENSDARG0000006821740
stx1b / syntaxin 1B / P61264* / P61266*ENSDARG0000000050340
stx3a / syntaxin 3A / STX3* / Q64704* / Q13277* / syntaxin 3*ENSDARG0000000188038
stx1a / syntaxin 1A (brain) / O35526* / Q16623* / syntaxin 1A*ENSDARG0000005899437
stx4 / syntaxin 4 / Stx4a* / P70452* / Q12846*ENSDARG0000005251834
STX3 / zgc:165520 / Q13277* / Q64704* / syntaxin 3*ENSDARG0000005198134
stx11a / syntaxin 11a / STX11* / O75558* / syntaxin 11*ENSDARG0000004403925
stx11b.1 / syntaxin 11b, tandem duplicate 1 / STX11* / O75558* / syntaxin 11*ENSDARG0000002929024
stx11b.2 / syntaxin 11b, tandem duplicate 2 / STX11* / O75558* / syntaxin 11*ENSDARG0000004223123


Protein motifs (from Interpro)
Interpro ID Name
 IPR000727  Target SNARE coiled-coil homology domain
 IPR006011  Syntaxin, N-terminal domain
 IPR006012  Syntaxin/epimorphin, conserved site
 IPR010989  SNARE
 IPR028671  Syntaxin-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0007340 acrosome reaction IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0031629 synaptic vesicle fusion to presynaptic active zone membrane IBA
 biological_processGO:0048278 vesicle docking IBA
 biological_processGO:0061025 membrane fusion IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0008021 synaptic vesicle IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031201 SNARE complex IBA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr