ENSDARG00000000503


Danio rerio

Features
Gene ID: ENSDARG00000000503
  
Biological name :stx1b
  
Synonyms : stx1b / syntaxin 1B
  
Possible biological names infered from orthology : P61264 / P61266
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 5158306
Gene end: 5254699
  
Corresponding Affymetrix probe sets: Dr.22825.1.A1_at (Zebrafish Array)   Dr.8229.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000076389
Ensembl peptide - ENSDARP00000143853
swissprot - A0A286Y9I3
swissprot - Q1MTI1
ZFIN ID - ZDB-GENE-000330-4
Ensembl - ENSDARG00000000503
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 STX1BENSG00000099365Homo sapiens
 Stx1bENSMUSG00000030806Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
stx1a / syntaxin 1A (brain) / O35526* / Q16623* / syntaxin 1A*ENSDARG0000005899461
stx3a / syntaxin 3A / STX3* / Q64704* / Q13277* / syntaxin 3*ENSDARG0000000188056
stx2b / syntaxin 2b / STX2* / P32856* / syntaxin 2*ENSDARG0000006821755
STX3 / zgc:165520 / Q13277* / Q64704* / syntaxin 3*ENSDARG0000005198154
stx4 / syntaxin 4 / Stx4a* / P70452* / Q12846*ENSDARG0000005251844
stx11a / syntaxin 11a / STX11* / O75558* / syntaxin 11*ENSDARG0000004403932
stx2a / syntaxin 2a / STX2* / P32856* / syntaxin 2*ENSDARG0000000461831
stx11b.1 / syntaxin 11b, tandem duplicate 1 / STX11* / O75558* / syntaxin 11*ENSDARG0000002929030
stx11b.2 / syntaxin 11b, tandem duplicate 2 / STX11* / O75558* / syntaxin 11*ENSDARG0000004223128


Protein motifs (from Interpro)
Interpro ID Name
 IPR000727  Target SNARE coiled-coil homology domain
 IPR006011  Syntaxin, N-terminal domain
 IPR006012  Syntaxin/epimorphin, conserved site
 IPR010989  SNARE
 IPR028669  Syntaxin 1A


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0031629 synaptic vesicle fusion to presynaptic active zone membrane IBA
 biological_processGO:0048278 vesicle docking IBA
 biological_processGO:0060025 regulation of synaptic activity IMP
 biological_processGO:0061025 membrane fusion IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0008021 synaptic vesicle IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031201 SNARE complex IBA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IEA


Pathways (from Reactome)
Pathway description
LGI-ADAM interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000445 optic tectum optic tectum neuronal action potential increased frequency , abnormal
optic tectum neuronal action potential irregular rhythm , abnormal
optic tectum cellular response to heat process quality , abnormal
optic tectum regulation of neuronal action potential decreased process quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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