ENSDARG00000056938


Danio rerio

Features
Gene ID: ENSDARG00000056938
  
Biological name :kera
  
Synonyms : kera / keratocan / Q5RI43
  
Possible biological names infered from orthology : O35367 / O60938
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 16337156
Gene end: 16345227
  
Corresponding Affymetrix probe sets: Dr.9880.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000073976
Ensembl peptide - ENSDARP00000112970
NCBI entrez gene - 567017     See in Manteia.
RefSeq - XM_005164765
RefSeq Peptide - NP_001020719
swissprot - Q5RI43
swissprot - Q5RI47
ZFIN ID - ZDB-GENE-041210-165
Ensembl - ENSDARG00000056938
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KERAENSGALG00000011270Gallus gallus
 KERAENSG00000139330Homo sapiens
 KeraENSMUSG00000019932Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prelp / proline/arginine-rich end leucine-rich repeat protein / Q9JK53* / P51888* / proline arginine-rich end leucine-rich repeat* / proline and arginine rich end leucine rich repeat protein*ENSDARG0000007059747
omd / osteomodulin / O35103* / Q99983*ENSDARG0000009360036
fmoda / fibromodulin a / FMOD* / P50608* / Q06828* / fibromodulin*ENSDARG0000004489536
fmodb / fibromodulin b / FMOD* / P50608* / Q06828* / fibromodulin*ENSDARG0000001029435
lum / lumican / P51884* / P51885*ENSDARG0000004558034
zgc:113307ENSDARG0000004489433
wu:fc23c09ENSDARG0000008800228
ecm2 / extracellular matrix protein 2, female organ and adipocyte specific / O94769* / Q5FW85* / extracellular matrix protein 2*ENSDARG0000007154928
dcn / decorin / P07585* / P28654*ENSDARG0000001206627
bgnb / biglycan b / BGN* / P21810* / P28653* / biglycan*ENSDARG0000000294526
si:dkey-6n6.1ENSDARG0000006248726
bgna / biglycan a / BGN* / P21810* / P28653* / biglycan*ENSDARG0000001788424
aspn / asporin (LRR class 1) / Q99MQ4* / Q9BXN1* / asporin*ENSDARG0000000219224
si:dkey-32e6.6ENSDARG0000007085723
podn / podocan / Q7TQ62* / Q7Z5L7*ENSDARG0000001902521


Protein motifs (from Interpro)
Interpro ID Name
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IBA


Pathways (from Reactome)
Pathway description
Keratan sulfate biosynthesis
Keratan sulfate degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism dead , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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