ENSDARG00000070769


Danio rerio

Features
Gene ID: ENSDARG00000070769
  
Biological name :foxg1a
  
Synonyms : forkhead box G1a / foxg1a
  
Possible biological names infered from orthology : forkhead box G1 / Forkhead box protein G1 / FOXG1 / Gm43517 / P55316 / Q60987
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 29117027
Gene end: 29119362
  
Corresponding Affymetrix probe sets: Dr.11839.1.S1_at (Zebrafish Array)   NM_131067_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000094979
NCBI entrez gene - 30274     See in Manteia.
RefSeq - NM_131067
RefSeq Peptide - NP_571142
swissprot - Q568V0
ZFIN ID - ZDB-GENE-990415-267
Ensembl - ENSDARG00000070769
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FOXG1ENSGALG00000036364Gallus gallus
 FOXG1ENSG00000176165Homo sapiens
 Foxg1ENSMUSG00000020950Mus musculus
 Gm43517ENSMUSG00000089922Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
foxg1b / forkhead box G1bENSDARG0000003270540
foxg1c / forkhead box G1cENSDARG0000006838040
foxg1d / forkhead box G1dENSDARG0000007005336
foxd2 / forkhead box D2 / FOXD1* / O35392* / O60548* / Q16676* / Q61345* / forkhead box D1* / Forkhead box protein D1 * / Forkhead box protein D2 *ENSDARG0000005813324
foxd3 / forkhead box D3 / FOXD4* / Q9UJU5* / Q12950* / Q3SYB3* / Q5VV16* / Q60688* / Q6VB84* / Q8WXT5* / Q9NU39* / FOXD4L3* / FOXD4L4* / FOXD4L5* / FOXD4L6* / FOXD4L1* / forkhead box D4* / ...ENSDARG0000002103224
foxd1 / forkhead box D1 / FOXD2* / Q61345* / O35392* / O60548* / Q16676* / forkhead box D2* / Forkhead box protein D2 * / Forkhead box protein D1 *ENSDARG0000002917923
foxe3 / forkhead box E3 / FOXE1* / O00358* / Q13461* / Q8R2I0* / Q9QY14* / forkhead box E1* / Forkhead box protein E1 * / Forkhead box protein E3 *ENSDARG0000006289221
foxd5 / forkhead box D5 / FOXD1* / FOXD2* / Q16676* / Q61345* / O35392* / O60548* / forkhead box D2* / forkhead box D1* / Forkhead box protein D1 * / Forkhead box protein D2 *ENSDARG0000004248520
foxf2a / forkhead box F2a / FOXF2* / O54743* / Q12947* / forkhead box F2* / Forkhead box protein F2 *ENSDARG0000001719519
zgc:162612 / FOXD1* / FOXD2* / O60548* / Q61345* / Q16676* / O35392* / forkhead box D1* / forkhead box D2* / Forkhead box protein D1 * / Forkhead box protein D2 *ENSDARG0000007969919
foxf2b / forkhead box F2b / FOXF2* / O54743* / Q12947* / forkhead box F2* / Forkhead box protein F2 *ENSDARG0000007038919
foxe1 / forkhead box E1 / FOXE3* / Q9QY14* / O00358* / Q13461* / Q8R2I0* / forkhead box E3* / Forkhead box protein E3 * / Forkhead box protein E1 *ENSDARG0000007926618
foxf1 / A1L1S5 / forkhead box F1 / Q61080* / Q12946* / Forkhead box protein F1 *ENSDARG0000001539917
si:dkey-7e14.3 / Gm5294* / AC187653.1*ENSDARG0000008605516
foxq1b / forkhead box Q1b / FOXQ1* / O70220* / Q9C009* / forkhead box Q1* / Forkhead box protein Q1 *ENSDARG0000005539516
foxp1b / forkhead box P1b / Foxp1* / P58462* / Mus musculus forkhead box P1 (Foxp1), transcript variant 4, mRNA.*ENSDARG0000001418115
foxp4 / forkhead box P4ENSDARG0000007612015
foxq1a / forkhead box Q1a / FOXQ1* / O70220* / Q9C009* / forkhead box Q1* / Forkhead box protein Q1 *ENSDARG0000003089615
foxh1 / forkhead box H1 / O75593* / O88621* / Forkhead box protein H1 *ENSDARG0000005563014
foxp2 / forkhead box P2ENSDARG0000000545314


Protein motifs (from Interpro)
Interpro ID Name
 IPR001766  Fork head domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR018122  Fork head domain conserved site1
 IPR030456  Fork head domain conserved site 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0030182 neuron differentiation IMP
 biological_processGO:0043584 nose development IMP
 biological_processGO:0060059 embryonic retina morphogenesis in camera-type eye IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000047 peripheral olfactory organ peripheral olfactory organ morphology , abnormal
Show

 ZFA:0000050 optic vesicle optic vesicle malformed , abnormal
Show

 ZFA:0000402 olfactory bulb olfactory bulb morphology , abnormal
Show

 ZFA:0009358 ciliated olfactory receptor neuron ciliated olfactory receptor neuron decreased amount , abnormal
Show

 ZFA:0009359 microvillous olfactory receptor neuron microvillous olfactory receptor neuron decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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