ENSDARG00000042485


Danio rerio

Features
Gene ID: ENSDARG00000042485
  
Biological name :foxd5
  
Synonyms : forkhead box D5 / foxd5
  
Possible biological names infered from orthology : forkhead box D1 / forkhead box D2 / Forkhead box protein D1 / Forkhead box protein D2 / FOXD1 / FOXD2 / O35392 / O60548 / Q16676 / Q61345
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 30452945
Gene end: 30454096
  
Corresponding Affymetrix probe sets: Dr.592.1.S1_at (Zebrafish Array)   NM_131270_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000062302
NCBI entrez gene - 30524     See in Manteia.
RefSeq - NM_131270
RefSeq Peptide - NP_571345
swissprot - B0R0B2
ZFIN ID - ZDB-GENE-980605-4
Ensembl - ENSDARG00000042485
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FOXD1ENSG00000251493Homo sapiens
 FOXD2ENSG00000186564Homo sapiens
 Foxd1ENSMUSG00000078302Mus musculus
 Foxd2ENSMUSG00000055210Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
foxd3 / forkhead box D3 / FOXD4* / Q9UJU5* / Q12950* / Q3SYB3* / Q5VV16* / Q60688* / Q6VB84* / Q8WXT5* / Q9NU39* / FOXD4L3* / FOXD4L4* / FOXD4L5* / FOXD4L6* / FOXD4L1* / forkhead box D4* / ...ENSDARG0000002103243
foxd1 / forkhead box D1 / FOXD2* / Q61345* / O35392* / O60548* / Q16676* / forkhead box D2* / Forkhead box protein D2 * / Forkhead box protein D1 *ENSDARG0000002917940
foxd2 / forkhead box D2 / FOXD1* / O35392* / O60548* / Q16676* / Q61345* / forkhead box D1* / Forkhead box protein D1 * / Forkhead box protein D2 *ENSDARG0000005813339
zgc:162612 / FOXD1* / FOXD2* / O60548* / Q61345* / Q16676* / O35392* / forkhead box D1* / forkhead box D2* / Forkhead box protein D1 * / Forkhead box protein D2 *ENSDARG0000007969935
foxe3 / forkhead box E3 / FOXE1* / O00358* / Q13461* / Q8R2I0* / Q9QY14* / forkhead box E1* / Forkhead box protein E1 * / Forkhead box protein E3 *ENSDARG0000006289229
foxe1 / forkhead box E1 / FOXE3* / Q9QY14* / O00358* / Q13461* / Q8R2I0* / forkhead box E3* / Forkhead box protein E3 * / Forkhead box protein E1 *ENSDARG0000007926628
foxg1a / forkhead box G1a / FOXG1* / P55316* / Q60987* / Gm43517* / forkhead box G1* / Forkhead box protein G1 *ENSDARG0000007076926
foxg1c / forkhead box G1cENSDARG0000006838025
foxg1b / forkhead box G1bENSDARG0000003270524
foxg1d / forkhead box G1dENSDARG0000007005323
foxf2a / forkhead box F2a / FOXF2* / O54743* / Q12947* / forkhead box F2* / Forkhead box protein F2 *ENSDARG0000001719523
si:dkey-7e14.3 / Gm5294* / AC187653.1*ENSDARG0000008605523
foxf2b / forkhead box F2b / FOXF2* / O54743* / Q12947* / forkhead box F2* / Forkhead box protein F2 *ENSDARG0000007038923
foxf1 / A1L1S5 / forkhead box F1 / Q61080* / Q12946* / Forkhead box protein F1 *ENSDARG0000001539922
foxq1b / forkhead box Q1b / FOXQ1* / O70220* / Q9C009* / forkhead box Q1* / Forkhead box protein Q1 *ENSDARG0000005539522
foxq2 / forkhead box Q2ENSDARG0000007139421
foxq1a / forkhead box Q1a / FOXQ1* / O70220* / Q9C009* / forkhead box Q1* / Forkhead box protein Q1 *ENSDARG0000003089621
foxh1 / forkhead box H1 / O75593* / O88621* / Forkhead box protein H1 *ENSDARG0000005563020
foxp1b / forkhead box P1b / Foxp1* / P58462* / Mus musculus forkhead box P1 (Foxp1), transcript variant 4, mRNA.*ENSDARG0000001418117
foxp1a / forkhead box P1aENSDARG0000000484316


Protein motifs (from Interpro)
Interpro ID Name
 IPR001766  Fork head domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR018122  Fork head domain conserved site1
 IPR030456  Fork head domain conserved site 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0032525 somite rostral/caudal axis specification IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000155 somite somite shape , abnormal
somite increased width , abnormal
somite malformed , abnormal
somite deformed , abnormal
somite disorganized , abnormal
somite anterior-posterior polarity , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
whole organism anterior-posterior axis deformed , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region truncated , abnormal
Show

 ZFA:0001462 somite border somite border irregular spatial pattern , abnormal
somite border disorganized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr