ENSG00000176165


Homo sapiens

Features
Gene ID: ENSG00000176165
  
Biological name :FOXG1
  
Synonyms : forkhead box G1 / FOXG1 / P55316
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q12
Gene start: 28760330
Gene end: 28770277
  
Corresponding Affymetrix probe sets: 206018_at (Human Genome U133 Plus 2.0 Array)   207658_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000339004
NCBI entrez gene - 2290     See in Manteia.
OMIM - 164874
RefSeq - NM_005249
RefSeq Peptide - NP_005240
swissprot - P55316
Ensembl - ENSG00000176165
  
Related genetic diseases (OMIM): 613454 - Rett syndrome, congenital variant, 613454

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 foxg1aENSDARG00000070769Danio rerio
 FOXG1ENSGALG00000036364Gallus gallus
 Foxg1ENSMUSG00000020950Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FOXD2 / O60548 / forkhead box D2ENSG0000018656423
FOXD3 / Q9UJU5 / forkhead box D3ENSG0000018714022
FOXD1 / Q16676 / forkhead box D1ENSG0000025149322
FOXD4 / Q12950 / forkhead box D4ENSG0000017012220
Q6VB84 / FOXD4L3 / forkhead box D4 like 3ENSG0000018755919
FOXE1 / O00358 / forkhead box E1ENSG0000017891919
Q5VV16 / FOXD4L5 / forkhead box D4 like 5ENSG0000020477919
Q8WXT5 / FOXD4L4 / forkhead box D4 like 4ENSG0000018465919
Q3SYB3 / FOXD4L6 / forkhead box D4 like 6ENSG0000027351419
Q9NU39 / FOXD4L1 / forkhead box D4 like 1ENSG0000018449218
FOXF2 / Q12947 / forkhead box F2ENSG0000013727318
FOXE3 / Q13461 / forkhead box E3ENSG0000018679017
FOXQ1 / Q9C009 / forkhead box Q1ENSG0000016437917
AC187653.1ENSG0000024876716
FOXP4 / Q8IVH2 / forkhead box P4ENSG0000013716615
FOXF1 / Q12946 / forkhead box F1ENSG0000010324115
FOXP2 / O15409 / forkhead box P2ENSG0000012857314
FOXP1 / Q9H334 / forkhead box P1ENSG0000011486114
FOXH1 / O75593 / forkhead box H1ENSG0000016097313
FOXP3 / Q9BZS1 / forkhead box P3ENSG0000004976811


Protein motifs (from Interpro)
Interpro ID Name
 IPR001766  Fork head domain
 IPR018122  Fork head domain conserved site1
 IPR030456  Fork head domain conserved site 2
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0002052 positive regulation of neuroblast proliferation IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007346 regulation of mitotic cell cycle IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0007568 aging IEA
 biological_processGO:0009653 anatomical structure morphogenesis IBA
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0016199 axon midline choice point recognition IEA
 biological_processGO:0021852 pyramidal neuron migration IEA
 biological_processGO:0021954 central nervous system neuron development IEA
 biological_processGO:0021987 cerebral cortex development IEA
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0045665 negative regulation of neuron differentiation IEA
 biological_processGO:0045666 positive regulation of neuron differentiation IEA
 biological_processGO:0045787 positive regulation of cell cycle IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0048664 neuron fate determination IEA
 biological_processGO:0048667 cell morphogenesis involved in neuron differentiation IEA
 biological_processGO:0051726 regulation of cell cycle IEA
 biological_processGO:2000177 regulation of neural precursor cell proliferation IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
Show

 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
Show

 HP:0000232 Everted lower lip 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
Show

 HP:0000319 Flat philtrum 
Show

 HP:0000343 Long philtrum 
Show

 HP:0000365 Hearing loss 
Show

 HP:0000411 Protruding ears 
Show

 HP:0000414 Bulbous nose 
Show

 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
Show

 HP:0000445 Broad nose 
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
Show

 HP:0000733 Stereotyped, repetitive behaviour 
Show

 HP:0000787 Kidney stones 
Show

 HP:0000817 Poor eye contact 
Show

 HP:0001163 Abnormality of the metacarpal bones 
Show

 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
Show

 HP:0001270 Motor retardation 
Show

 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
Show

 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
Show

 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
Show

 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
Show

 HP:0001344 Absent speech development 
Show

 HP:0001510 Growth retardation 
Show

 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
Show

 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
Show

 HP:0002019 Constipation 
Show

 HP:0002020 Gastroesophageal reflux 
Show

 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
Show

 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0002119 Ventriculomegaly 
Show

 HP:0002120 Cerebral cortical atrophy 
Show

 HP:0002186 Apraxia "A defect in the understanding of complex motor commands and in the execution of certain learned movements, i.e., deficits in the cognitive components of learned movements." [HPO:curators]
Show

 HP:0002213 Fine hair 
Show

 HP:0002305 Athetosis "Athetosis (from the Greek word for changeable or unfixed ) refers to an inability to sustain the muscles of the fingers, toes, tongue, or any other group of muscles in a fixed position. Instead, posture is interrupted by slow, purposeless involuntary movements." [HPO:curators]
Show

 HP:0002307 Drooling 
Show

 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
Show

 HP:0002376 Developmental regression 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002808 Kyphosis 
Show

 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
Show

 HP:0003745 Sporadic 
Show

 HP:0003763 Bruxism 
Show

 HP:0003781 Excessive salivation 
Show

 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
Show

 HP:0005280 Depressed nasal root and bridge 
Show

 HP:0005487 Prominent metopic suture "A prominent persistent frontal suture (metopic suture)." [HPO:curators]
Show

 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
Show

 HP:0009738 Abnormal antihelix "An abnormal form of the antihelix, which is the curved prominence of cartilage, parallel with and in front of the helix, and which divides into the crura antihelicis, between which is a triangular depression, the fossa triangularis." [HPO:curators]
Show

 HP:0009879 Cortical gyral simplification "An abnormal reduction of the number and complexity of the pattern of gyrations of the cerebral cortex." [HPO:curators]
Show

 HP:0009896 Abnormality of the antitragus "An abnormality of the antitrgus, which is a small tubercle opposite to the tragus of the ear. The antitragus and the tragus are separated by the intertragic notch." [HPO:curators]
Show

 HP:0010804 Tented upper lip vermilion "Triangular appearance of the oral aperture with the apex in the midpoint of the upper vermilion and the lower vermilion forming the base." [pmid:19125428]
Show

 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
Show

 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
Show

 HP:0012448 Delayed myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552)." [ORCID:0000-0001-5208-3432]
Show

 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
Show

 HP:0100022 Abnormality of movement "An abnormality of movement with a neurological basis characterized by changes in coordination and speed of voluntary movements." [HPO:probinson]
Show

 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
Show

 HP:0100540 Palpebral edema 
Show

 HP:0100660 Dyskinesis "A movement disorder which consists of effects including diminished voluntary movements and the presence of involuntary movements." [HPO:sdoelken]
Show

 HP:0100703 Tongue thrusting 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000169057 MECP2 / P51608 / methyl-CpG binding protein 2  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr