ENSG00000103241


Homo sapiens

Features
Gene ID: ENSG00000103241
  
Biological name :FOXF1
  
Synonyms : forkhead box F1 / FOXF1 / Q12946
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q24.1
Gene start: 86510527
Gene end: 86515418
  
Corresponding Affymetrix probe sets: 205935_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000262426
NCBI entrez gene - 2294     See in Manteia.
OMIM - 601089
RefSeq - NM_001451
RefSeq Peptide - NP_001442
swissprot - Q12946
Ensembl - ENSG00000103241
  
Related genetic diseases (OMIM): 265380 - Alveolar capillary dysplasia with misalignment of pulmonary veins, 265380

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 foxf1ENSDARG00000015399Danio rerio
 FOXF1ENSGALG00000034111Gallus gallus
 Foxf1ENSMUSG00000042812Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FOXF2 / Q12947 / forkhead box F2ENSG0000013727358
FOXD2 / O60548 / forkhead box D2ENSG0000018656425
FOXD3 / Q9UJU5 / forkhead box D3ENSG0000018714024
FOXD1 / Q16676 / forkhead box D1ENSG0000025149324
FOXD4 / Q12950 / forkhead box D4ENSG0000017012224
Q9NU39 / FOXD4L1 / forkhead box D4 like 1ENSG0000018449223
Q8WXT5 / FOXD4L4 / forkhead box D4 like 4ENSG0000018465922
Q3SYB3 / FOXD4L6 / forkhead box D4 like 6ENSG0000027351422
Q6VB84 / FOXD4L3 / forkhead box D4 like 3ENSG0000018755922
Q5VV16 / FOXD4L5 / forkhead box D4 like 5ENSG0000020477922
FOXQ1 / Q9C009 / forkhead box Q1ENSG0000016437921
FOXE1 / O00358 / forkhead box E1ENSG0000017891921
FOXE3 / Q13461 / forkhead box E3ENSG0000018679020
FOXG1 / P55316 / forkhead box G1ENSG0000017616520
FOXH1 / O75593 / forkhead box H1ENSG0000016097319
AC187653.1ENSG0000024876716
FOXP1 / Q9H334 / forkhead box P1ENSG0000011486115
FOXP2 / O15409 / forkhead box P2ENSG0000012857314
FOXP4 / Q8IVH2 / forkhead box P4ENSG0000013716613
FOXP3 / Q9BZS1 / forkhead box P3ENSG0000004976812


Protein motifs (from Interpro)
Interpro ID Name
 IPR001766  Fork head domain
 IPR018122  Fork head domain conserved site1
 IPR030456  Fork head domain conserved site 2
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001568 blood vessel development IMP
 biological_processGO:0001570 vasculogenesis IEA
 biological_processGO:0001701 in utero embryonic development IMP
 biological_processGO:0001756 somitogenesis IEA
 biological_processGO:0001763 morphogenesis of a branching structure IMP
 biological_processGO:0002053 positive regulation of mesenchymal cell proliferation IEA
 biological_processGO:0003197 endocardial cushion development IMP
 biological_processGO:0003214 cardiac left ventricle morphogenesis IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0007368 determination of left/right symmetry IEA
 biological_processGO:0007494 midgut development IMP
 biological_processGO:0007498 mesoderm development IEA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0009887 animal organ morphogenesis IEA
 biological_processGO:0010811 positive regulation of cell-substrate adhesion IEA
 biological_processGO:0014822 detection of wounding IEA
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0030198 extracellular matrix organization IEA
 biological_processGO:0030323 respiratory tube development IMP
 biological_processGO:0030324 lung development IMP
 biological_processGO:0030335 positive regulation of cell migration IEA
 biological_processGO:0031016 pancreas development IMP
 biological_processGO:0043305 negative regulation of mast cell degranulation IEA
 biological_processGO:0045198 establishment of epithelial cell apical/basal polarity IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048286 lung alveolus development IEA
 biological_processGO:0048371 lateral mesodermal cell differentiation IEA
 biological_processGO:0048557 embryonic digestive tract morphogenesis IMP
 biological_processGO:0048565 digestive tract development IMP
 biological_processGO:0048566 embryonic digestive tract development IEA
 biological_processGO:0048613 embryonic ectodermal digestive tract morphogenesis IMP
 biological_processGO:0048617 embryonic foregut morphogenesis IEA
 biological_processGO:0050728 negative regulation of inflammatory response IEA
 biological_processGO:0051145 smooth muscle cell differentiation IEA
 biological_processGO:0051150 regulation of smooth muscle cell differentiation IEA
 biological_processGO:0060425 lung morphogenesis IEA
 biological_processGO:0060426 lung vasculature development IMP
 biological_processGO:0060438 trachea development IMP
 biological_processGO:0060441 epithelial tube branching involved in lung morphogenesis IEA
 biological_processGO:0060461 right lung morphogenesis IEA
 biological_processGO:0060463 lung lobe morphogenesis IEA
 biological_processGO:0060841 venous blood vessel development IMP
 biological_processGO:0061030 epithelial cell differentiation involved in mammary gland alveolus development IEA
 biological_processGO:0071345 cellular response to cytokine stimulus IEA
 biological_processGO:0071407 cellular response to organic cyclic compound IEA
 biological_processGO:0072001 renal system development IMP
 biological_processGO:0072189 ureter development IMP
 biological_processGO:0090131 mesenchyme migration IEA
 biological_processGO:0097070 ductus arteriosus closure IMP
 biological_processGO:0098609 cell-cell adhesion IEA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005667 transcription factor complex TAS
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IMP
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding ISM
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IMP
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IBA
 molecular_functionGO:0043565 sequence-specific DNA binding ISS
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000072 Hydroureter "The distention of the ureter with urine." [HPO:curators]
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 HP:0000126 Hydronephrosis 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0001195 Single umbilical artery 
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 HP:0001561 Polyhydramnios 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001647 Bicuspid aortic valve "The presence of a bicuspid `aortic valve` (FMA:7236)." [HPO:probinson]
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 HP:0001650 Aortic stenosis "The presence of a stenosis (narrowing) of the aortic valve." [HPO:curators]
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 HP:0001694 Right-to-left shunt 
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 HP:0001734 Annular pancreas 
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 HP:0001746 Asplenia "Absence (aplasia) of the spleen." [HPO:curators]
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002092 Pulmonary hypertension 
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 HP:0002098 Respiratory distress 
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 HP:0002101 Abnormal lung lobation "Defects in the formation of pulmonary lobules." [HPO:curators]
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 HP:0002245 Meckel diverticulum 
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 HP:0002247 Duodenal atresia "A developmental defect resulting in complete obliteration of the duodenal lumen, that is, an abnormal closure of the duodenum." [HPO:curator]
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 HP:0002251 Congenital megacolon "An abnormality resulting from a lack of intestinal ganglion cells (i.e., an aganglionic section of bowel) that results in bowel obstruction with enlargement of the colon." [HPO:curators]
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 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
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 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
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 HP:0002580 Volvulus 
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 HP:0003468 Abnormalities of the vertebrae 
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 HP:0003811 Neonatal death 
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 HP:0004383 Hypoplastic left heart 
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 HP:0006695 Tricuspid and mitral valves are replaced by a single inlet valve 
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 HP:0010444 Pulmonary insufficiency "The retrograde (backwards) flow of blood through the pulmonary valve into the right ventricle during diastole." [HPO:curators]
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 HP:0010882 Pulmonary valve atresia "A congenital disorder of the pulmonary valve in which the orifice of the valve fails to develop." [HPO:probinson]
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 HP:0011467 Absent gallbladder "A developmental defect in which the gallbladder fails to form." [DDD:hfirth]
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 HP:0011718 Abnormality of the pulmonary veins "An abnormality of the `pulmonary veins` (FMA:70827)." [HPO:probinson]
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 HP:0100867 Duodenal stenosis "The narrowing or partial blockage of a portion of the duodenum." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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