ENSDARG00000071465


Danio rerio

Features
Gene ID: ENSDARG00000071465
  
Biological name :lrrc39
  
Synonyms : F1R6I3 / leucine rich repeat containing 39 / lrrc39
  
Possible biological names infered from orthology : Leucine-rich repeat-containing protein 39 / Q8BGI7 / Q96DD0
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 16308450
Gene end: 16312217
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000096455
Ensembl peptide - ENSDARP00000136641
NCBI entrez gene - 550456     See in Manteia.
RefSeq - NM_001017760
RefSeq Peptide - NP_001017760
swissprot - F1R6I3
swissprot - A0A0R4INM2
ZFIN ID - ZDB-GENE-050417-279
Ensembl - ENSDARG00000071465
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRRC39ENSGALG00000005284Gallus gallus
 LRRC39ENSG00000122477Homo sapiens
 Lrrc39ENSMUSG00000027961Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LRRC8E / si:zfos-323e3.4 / Q6NSJ5* / Q66JT1* / AC093423.3* / Volume-regulated anion channel subunit LRRC8E * / leucine rich repeat containing 8 VRAC subunit E*ENSDARG0000007828322
lrrc8ab / leucine rich repeat containing 8 VRAC subunit Ab / Q8IWT6* / LRRC8A* / Q80WG5* / Gm28035* / predicted gene, 28035* / Volume-regulated anion channel subunit LRRC8A * / leucine rich...ENSDARG0000005215521
lrrc8aa / leucine rich repeat containing 8 VRAC subunit Aa / Q8IWT6* / LRRC8A* / Q80WG5* / Gm28035* / predicted gene, 28035* / Volume-regulated anion channel subunit LRRC8A * / leucine rich...ENSDARG0000003218821
lrch1 / leucine-rich repeats and calponin homology (CH) domain containing 1 / P62046* / Q9Y2L9* / leucine rich repeats and calponin homology domain containing 1* / Leucine-rich repeat and c...ENSDARG0000007877821
lrrc8c / leucine rich repeat containing 8 VRAC subunit C / Q8R502* / Q8TDW0* / Volume-regulated anion channel subunit LRRC8C *ENSDARG0000009991121
pidd1 / p53-induced death domain protein 1 / Q9ERV7* / Q9HB75* / p53-induced death domain-containing protein 1 *ENSDARG0000007462621
lrrc8db / leucine rich repeat containing 8 VRAC subunit Db / LRRC8D* / Q7L1W4* / Q8BGR2* / Volume-regulated anion channel subunit LRRC8D * / leucine rich repeat containing 8 VRAC subunit D*ENSDARG0000010384020
si:ch211-106h11.1ENSDARG0000001772019
lrch4 / leucine-rich repeats and calponin homology (CH) domain containing 4 / Q921G6* / O75427* / Gm20605* / predicted gene 20605* / leucine rich repeats and calponin homology domain contai...ENSDARG0000006825819
lrrc28 / leucine rich repeat containing 28 / Q86X40*ENSDARG0000005747719
lrrc18b / leucine rich repeat containing 18b / Q9CQ07* / LRRC18* / Q8N456* / leucine rich repeat containing 18* / Leucine-rich repeat-containing protein 18 *ENSDARG0000007623618
lrrc8da / leucine rich repeat containing 8 VRAC subunit Da / LRRC8D* / Q7L1W4* / Q8BGR2* / Volume-regulated anion channel subunit LRRC8D * / leucine rich repeat containing 8 VRAC subunit D*ENSDARG0000010337018
lrch2 / leucine-rich repeats and calponin homology (CH) domain containing 2 / Q3UMG5* / Q5VUJ6* / leucine rich repeats and calponin homology domain containing 2* / Leucine-rich repeat and c...ENSDARG0000007558018
lrrc18a / leucine rich repeat containing 18a / Q9CQ07* / LRRC18* / Q8N456* / leucine rich repeat containing 18* / Leucine-rich repeat-containing protein 18 *ENSDARG0000007879017
si:dkey-1h4.4ENSDARG0000010554817
LRRC69 / si:ch73-302o18.2 / Q6ZNQ3* / Q9D9Q0* / leucine rich repeat containing 69* / Leucine-rich repeat-containing protein 69 *ENSDARG0000008831616
lrrc57 / Q6DHL5 / leucine rich repeat containing 57 / Q8N9N7* / leucine-rich repeat-containing protein 57 isoform a *ENSDARG0000004393816
lrch3 / leucine-rich repeats and calponin homology (CH) domain containing 3 / Q8BVU0* / Q96II8* / leucine rich repeats and calponin homology domain containing 3* / Leucine-rich repeat and c...ENSDARG0000010067915
rsu1 / Ras suppressor protein 1 / Q15404*ENSDARG0000010288513
lrsam1 / leucine rich repeat and sterile alpha motif containing 1 / Q6UWE0* / Q80ZI6* / E3 ubiquitin-protein ligase LRSAM1 *ENSDARG0000006068313


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045214 sarcomere organization IMP
 biological_processGO:0055008 cardiac muscle tissue morphogenesis IMP
 biological_processGO:0060047 heart contraction IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0031430 M band IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000114 heart heart cardiac muscle cell disorganized , abnormal
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 ZFA:0001273 ventral mandibular arch ventral mandibular arch malformed , abnormal
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 ZFA:0005145 muscle muscle deformed , abnormal
Show

 ZFA:0009115 skeletal muscle cell skeletal muscle cell sarcomere morphology , abnormal
skeletal muscle cell M band morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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