ENSG00000122477


Homo sapiens

Features
Gene ID: ENSG00000122477
  
Biological name :LRRC39
  
Synonyms : leucine rich repeat containing 39 / LRRC39 / Q96DD0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p21.2
Gene start: 100148449
Gene end: 100178273
  
Corresponding Affymetrix probe sets: 1559580_at (Human Genome U133 Plus 2.0 Array)   227532_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000344470
Ensembl peptide - ENSP00000359156
Ensembl peptide - ENSP00000359157
Ensembl peptide - ENSP00000480740
NCBI entrez gene - 127495     See in Manteia.
RefSeq - NM_001256387
RefSeq - NM_001256385
RefSeq - NM_001256386
RefSeq - NM_144620
RefSeq Peptide - NP_001243314
RefSeq Peptide - NP_001243315
RefSeq Peptide - NP_001243316
RefSeq Peptide - NP_653221
swissprot - Q96DD0
Ensembl - ENSG00000122477
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 F1R6I3ENSDARG00000071465Danio rerio
 LRRC39ENSGALG00000005284Gallus gallus
 Lrrc39ENSMUSG00000027961Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LRRC2 / Q9BYS8 / leucine rich repeat containing 2ENSG0000016382732
PIDD1 / Q9HB75 / p53-induced death domain protein 1ENSG0000017759522
LRCH1 / Q9Y2L9 / leucine rich repeats and calponin homology domain containing 1ENSG0000013614121
LRCH2 / Q5VUJ6 / leucine rich repeats and calponin homology domain containing 2ENSG0000013022421
LRCH3 / Q96II8 / leucine rich repeats and calponin homology domain containing 3ENSG0000018600121
LRRC8A / Q8IWT6 / leucine rich repeat containing 8 VRAC subunit AENSG0000013680221
LRRC8D / Q7L1W4 / leucine rich repeat containing 8 VRAC subunit DENSG0000017149220
LRRC8C / Q8TDW0 / leucine rich repeat containing 8 VRAC subunit CENSG0000017148820
LRRC28 / Q86X40 / leucine rich repeat containing 28ENSG0000016890419
LRCH4 / O75427 / leucine rich repeats and calponin homology domain containing 4ENSG0000007745419
LRRC8B / Q6P9F7 / leucine rich repeat containing 8 VRAC subunit BENSG0000019714719
LRRC8E / Q6NSJ5 / leucine rich repeat containing 8 VRAC subunit EENSG0000017101718
LRRC18 / Q8N456 / leucine rich repeat containing 18ENSG0000016538316
LRSAM1 / Q6UWE0 / leucine rich repeat and sterile alpha motif containing 1ENSG0000014835615
LRRC69 / Q6ZNQ3 / leucine rich repeat containing 69ENSG0000021495415
LRRC57 / Q8N9N7 / leucine rich repeat containing 57ENSG0000018097914
RSU1 / Q15404 / Ras suppressor protein 1ENSG0000014848413
AC093423.3ENSG000002719490


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR025875  Leucine rich repeat 4
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0031430 M band IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr