ENSG00000148356


Homo sapiens

Features
Gene ID: ENSG00000148356
  
Biological name :LRSAM1
  
Synonyms : leucine rich repeat and sterile alpha motif containing 1 / LRSAM1 / Q6UWE0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q33.3
Gene start: 127451486
Gene end: 127503501
  
Corresponding Affymetrix probe sets: 227675_at (Human Genome U133 Plus 2.0 Array)   235449_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000362421
Ensembl peptide - ENSP00000300417
Ensembl peptide - ENSP00000322937
Ensembl peptide - ENSP00000362419
NCBI entrez gene - 90678     See in Manteia.
OMIM - 610933
RefSeq - XM_017015284
RefSeq - NM_001005373
RefSeq - NM_001005374
RefSeq - NM_001190723
RefSeq - NM_138361
RefSeq - XM_006717316
RefSeq - XM_017015283
RefSeq Peptide - NP_001177652
RefSeq Peptide - NP_612370
RefSeq Peptide - NP_001005373
RefSeq Peptide - NP_001005374
swissprot - Q6UWE0
swissprot - A0A024R870
Ensembl - ENSG00000148356
  
Related genetic diseases (OMIM): 614436 - Charcot-Marie-Tooth disease, axonal, type 2P, 614436
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lrsam1ENSDARG00000060683Danio rerio
 LRSAM1ENSGALG00000008819Gallus gallus
 Lrsam1ENSMUSG00000026792Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LRRC8A / Q8IWT6 / leucine rich repeat containing 8 VRAC subunit AENSG0000013680215
LRRC8B / Q6P9F7 / leucine rich repeat containing 8 VRAC subunit BENSG0000019714714
LRRC8C / Q8TDW0 / leucine rich repeat containing 8 VRAC subunit CENSG0000017148814
LRRC8E / Q6NSJ5 / leucine rich repeat containing 8 VRAC subunit EENSG0000017101713
LRRC8D / Q7L1W4 / leucine rich repeat containing 8 VRAC subunit DENSG0000017149213
LRCH4 / O75427 / leucine rich repeats and calponin homology domain containing 4ENSG0000007745411
RSU1 / Q15404 / Ras suppressor protein 1ENSG0000014848411
LRCH1 / Q9Y2L9 / leucine rich repeats and calponin homology domain containing 1ENSG0000013614111
PIDD1 / Q9HB75 / p53-induced death domain protein 1ENSG0000017759510
LRCH3 / Q96II8 / leucine rich repeats and calponin homology domain containing 3ENSG0000018600110
LRCH2 / Q5VUJ6 / leucine rich repeats and calponin homology domain containing 2ENSG000001302249
LRRC28 / Q86X40 / leucine rich repeat containing 28ENSG000001689048
LRRC39 / Q96DD0 / leucine rich repeat containing 39ENSG000001224777
LRRC2 / Q9BYS8 / leucine rich repeat containing 2ENSG000001638277
LRRC69 / Q6ZNQ3 / leucine rich repeat containing 69ENSG000002149546
LRRC57 / Q8N9N7 / leucine rich repeat containing 57ENSG000001809796
LRRC18 / Q8N456 / leucine rich repeat containing 18ENSG000001653835
AC093423.3ENSG000002719491


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR001660  Sterile alpha motif domain
 IPR001841  Zinc finger, RING-type
 IPR003591  Leucine-rich repeat, typical subtype
 IPR013761  Sterile alpha motif/pointed domain superfamily
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IDA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0007165 signal transduction IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0030163 protein catabolic process IMP
 biological_processGO:0045806 negative regulation of endocytosis IMP
 biological_processGO:0046755 viral budding IMP
 biological_processGO:0051865 protein autoubiquitination IDA
 biological_processGO:0070086 ubiquitin-dependent endocytosis IDA
 biological_processGO:1904417 positive regulation of xenophagy IMP
 biological_processGO:2000786 positive regulation of autophagosome assembly IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0016020 membrane IDA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IDA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000764 Axonal degeneration 
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 HP:0001265 Hyporeflexia 
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 HP:0001284 Areflexia 
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 HP:0001761 Pes cavus 
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 HP:0001765 Hammer toes 
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 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002936 Distal sensory impairment 
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 HP:0003376 Steppage gait "An abnormal gait pattern that arises from weakness of the pretibial and peroneal muscles due to a lower motor neuron lesion. Affected patients have footdrop and are unable to dorsiflex and evert the foot. The leg is lifted high on walking so that the toes clear the ground, and there may be a slapping noise when the foot strikes the ground again." [HPO:curators]
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 HP:0003677 Slow progression 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003829 Incomplete penetrance 
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 HP:0006886 Decreased distal vibration sense "A decrease in the ability to perceive vibration in the distal portions of the limbs." [HPO:curators]
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 HP:0009027 Foot dorsiflexor weakness 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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