ENSDARG00000089769


Danio rerio

Features
Gene ID: ENSDARG00000089769
  
Biological name :hapln1a
  
Synonyms : hapln1a / hyaluronan and proteoglycan link protein 1a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 46490622
Gene end: 46505702
  
Corresponding Affymetrix probe sets: Dr.19404.1.S1_at (Zebrafish Array)   Dr.20010.12.S1_at (Zebrafish Array)   Dr.20010.12.S1_s_at (Zebrafish Array)   Dr.20010.16.A1_at (Zebrafish Array)   Dr.24236.1.S1_at (Zebrafish Array)   Dr.24236.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000136494
Ensembl peptide - ENSDARP00000101940
Ensembl peptide - ENSDARP00000109404
NCBI entrez gene - 493635     See in Manteia.
RefSeq - NM_001313730
RefSeq - NM_001007790
RefSeq Peptide - NP_001007791
RefSeq Peptide - NP_001300659
swissprot - B3DIH3
swissprot - Q1LXE1
swissprot - Q1LXE2
ZFIN ID - ZDB-GENE-050302-175
Ensembl - ENSDARG00000089769
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hapln1b / hyaluronan and proteoglycan link protein 1b / Q9QUP5* / HAPLN1* / P10915* / hyaluronan and proteoglycan link protein 1*ENSDARG0000006851660
hapln4 / hyaluronan and proteoglycan link protein 4 / Q80WM4* / Q86UW8*ENSDARG0000001854246
hapln3 / hyaluronan and proteoglycan link protein 3 / Q80WM5* / Q96S86*ENSDARG0000004580245
hapln2 / hyaluronan and proteoglycan link protein 2 / Q9ESM3* / Q9GZV7*ENSDARG0000000390344
ncanb / neurocan b / NCAN* / O14594* / neurocan*ENSDARG0000000578337
acana / aggrecan a / ACAN* / Q61282* / aggrecan* / Aggrecan core protein *ENSDARG0000003589136
vcana / versican a / VCAN* / P13611* / versican*ENSDARG0000010351536
acanb / aggrecan b / ACAN* / Q61282* / aggrecan* / Aggrecan core protein *ENSDARG0000004579935
bcan / brevican / Q61361* / Q96GW7* / Brevican core protein *ENSDARG0000009941235
vcanb / versican b / VCAN* / P13611* / versican*ENSDARG0000000940133
CU861477.1 / NCAN* / O14594* / neurocan*ENSDARG0000010012829
stab1 / stabilin 1 / Q9NY15*ENSDARG0000007648415
stab2 / stabilin 2 / Q8R4U0* / Q8WWQ8* / Stabilin-2 Short form stabilin-2*ENSDARG0000004574815
tnfaip6 / tumor necrosis factor, alpha-induced protein 6 / O08859* / P98066* / TNF alpha induced protein 6*ENSDARG0000009344015


Protein motifs (from Interpro)
Interpro ID Name
 IPR000538  Link domain
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IBA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007417 central nervous system development IBA
 biological_processGO:0031101 fin regeneration IMP
 molecular_functionGO:0005201 extracellular matrix structural constituent IBA
 molecular_functionGO:0005540 hyaluronic acid binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001269 regenerating fin regenerating fin decreased length , abnormal
regenerating fin cell proliferation decreased process quality , abnormal
regenerating fin lepidotrichium segment decreased length , abnormal
regenerating fin decreased amount , abnormal
regenerating fin cell proliferation decreased occurrence , abnormal
regenerating fin decreased length , ameliorated
regenerating fin lepidotrichium segment decreased length , ameliorated
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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