ENSDARG00000045799


Danio rerio

Features
Gene ID: ENSDARG00000045799
  
Biological name :acanb
  
Synonyms : acanb / aggrecan b
  
Possible biological names infered from orthology : ACAN / aggrecan / Aggrecan core protein / Q61282
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 19213872
Gene end: 19224298
  
Corresponding Affymetrix probe sets: DrAffx.2.69.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000124852
Ensembl peptide - ENSDARP00000154752
NCBI entrez gene - 559593     See in Manteia.
RefSeq - XM_021473853
swissprot - F8W252
ZFIN ID - ZDB-GENE-100422-16
Ensembl - ENSDARG00000045799
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ACANENSGALG00000006725Gallus gallus
 ACANENSG00000157766Homo sapiens
 AcanENSMUSG00000030607Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
acana / aggrecan a / ACAN* / Q61282* / aggrecan* / Aggrecan core protein *ENSDARG0000003589153
ncanb / neurocan b / NCAN* / O14594* / neurocan*ENSDARG0000000578322
vcanb / versican b / VCAN* / P13611* / versican*ENSDARG0000000940120
bcan / brevican / Q61361* / Q96GW7* / Brevican core protein *ENSDARG0000009941219
vcana / versican a / VCAN* / P13611* / versican*ENSDARG0000010351519
CU861477.1 / NCAN* / O14594* / neurocan*ENSDARG0000010012812
stab2 / stabilin 2 / Q8R4U0* / Q8WWQ8* / Stabilin-2 Short form stabilin-2*ENSDARG0000004574812
stab1 / stabilin 1 / Q9NY15*ENSDARG0000007648411
hapln1b / hyaluronan and proteoglycan link protein 1b / Q9QUP5* / HAPLN1* / P10915* / hyaluronan and proteoglycan link protein 1*ENSDARG0000006851610
hapln1a / hyaluronan and proteoglycan link protein 1aENSDARG000000897699
hapln2 / hyaluronan and proteoglycan link protein 2 / Q9ESM3* / Q9GZV7*ENSDARG000000039038
hapln4 / hyaluronan and proteoglycan link protein 4 / Q80WM4* / Q86UW8*ENSDARG000000185428
hapln3 / hyaluronan and proteoglycan link protein 3 / Q80WM5* / Q96S86*ENSDARG000000458028
tnfaip6 / tumor necrosis factor, alpha-induced protein 6 / O08859* / P98066* / TNF alpha induced protein 6*ENSDARG000000934405


Protein motifs (from Interpro)
Interpro ID Name
 IPR000436  Sushi/SCR/CCP domain
 IPR000538  Link domain
 IPR000742  EGF-like domain
 IPR001304  C-type lectin-like
 IPR007110  Immunoglobulin-like domain
 IPR013032  EGF-like, conserved site
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR018378  C-type lectin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IBA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007417 central nervous system development IBA
 biological_processGO:0031101 fin regeneration IMP
 molecular_functionGO:0005201 extracellular matrix structural constituent IBA
 molecular_functionGO:0005540 hyaluronic acid binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001269 regenerating fin regenerating fin decreased length , abnormal
regenerating fin decreased amount , abnormal
regenerating fin cell proliferation decreased occurrence , abnormal
regenerating fin bone mineralization decreased occurrence , abnormal
regenerating fin lepidotrichium segment decreased length , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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